| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,720,960 – 2,721,061 |
| Length | 101 |
| Max. P | 0.908133 |
| Location | 2,720,960 – 2,721,061 |
|---|---|
| Length | 101 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 64.79 |
| Shannon entropy | 0.70484 |
| G+C content | 0.58169 |
| Mean single sequence MFE | -40.17 |
| Consensus MFE | -17.77 |
| Energy contribution | -17.61 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2720960 101 + 24543557 -------------CGGUAGGAGGCCAUUCAAUGCUGCCGCCUUACUGGCCGCCAGCUGCUUAGUGGCCUCUUCGUACUGCGGCGGUGGUG---CUGGUGCGGGCUUGAUGUCCACUU -------------.((((((((((((((....(((((.(((.....))).).)))).....))))))))))...))))(((.(((.....---))).)))((((.....)))).... ( -42.90, z-score = -0.55, R) >droSim1.chr3L 2277154 101 + 22553184 -------------CGGUAGGAGGCCAUUCAAAGCUGCCGCCUUGCUGGCCGCCAACUGCUUGGUGGCCUCUUCGUAUUGCGGCGGUGGUG---CUGGUGCAGGCUUGAUGUCCACUU -------------.((((..(((((.......((((((((..(((.(((((((((....))))))))).....)))..))))))))..((---(....))))))))..)).)).... ( -46.20, z-score = -1.70, R) >droYak2.chr3L 14985846 101 - 24197627 -------------CGGUAGAAGGCCAUUCAAAGCUGCCGCCUUACUGGCCGCCAGCUGCUUGGUGGCCUCUUCGUACUGCGGCGGUGGUG---CUGGUGAGGGCUUGAUGUCCACAU -------------.((((..(((((.((((..((..(((((.....(((((((((....))))))))).....(.....))))))..)).---....)))))))))..)).)).... ( -44.90, z-score = -1.42, R) >droEre2.scaffold_4784 2747322 101 + 25762168 -------------CGGUAGAAGGCCAUUCAAAGCUGCCGCCUUGCUGGCCGCCAGCUGCUUGGUGGCCUCUUCGUACUGCGGUGGUGGUG---CUGGUGAGGGCUUGAUGUCCACUU -------------.((((..(((((.((((.(((.((((((((((.(((((((((....)))))))))..........)))).)))))))---))..)))))))))..)).)).... ( -45.40, z-score = -1.58, R) >droAna3.scaffold_13337 13933054 101 - 23293914 -------------CGGCAUAAGGCCGUUCAGAGCCGCCGCCUUGCUGGCCGCCAGCUGCUUGGUGGCCUCCUCAUACUGCGGCGGUGGAG---CGGGAGAGGGCUUCAGGUCCAGCU -------------.(((......((((((...((((((((..((..(((((((((....)))))))))....))....)))))))).)))---)))....((((.....)))).))) ( -51.50, z-score = -1.07, R) >dp4.chrXR_group5 100462 101 + 740492 -------------CGGCACCAGACCGUUCAGAGCCGCUGCCUUGCUGGCAGCUAGCUGCUUGGUGGCCUCCUCAUACUGCGGUGGCGGUG---CUGUCGACGGUUUGAUGUCCAGUU -------------.((((.((((((((((((.(((((((((.....))))))..(((((...((((.....))))...))))))))....---)))..))))))))).))))..... ( -45.90, z-score = -1.68, R) >droPer1.super_58 92909 101 - 410386 -------------CGGCACCAGACCGUUCAGAGCCGCUGCCUUGCUGGCAGCUAGCUGCUUGGUGGCCUCCUCAUACUGCGGUGGCGGUG---CUGUCGACGGUUUGAUGUCCAGUU -------------.((((.((((((((((((.(((((((((.....))))))..(((((...((((.....))))...))))))))....---)))..))))))))).))))..... ( -45.90, z-score = -1.68, R) >droWil1.scaffold_180916 1030678 101 + 2700594 ----------------CGGAUGCAUACCCAAGGCAGCUGCCUUAUUAGCCGCUAAUUGUUUGGUGGCCUCUUCAUAUUGCGGUGGUGGUUGACUUGAGGCUGGCUUUAUGUCCAAUU ----------------.((((........(((((....)))))...(((((((((....)))))((((((.(((.((..(....)..)))))...))))))))))....)))).... ( -33.40, z-score = -0.78, R) >apiMel3.Group1 17636829 78 - 25854376 -----------------------UUG--UAAUGAUAUCAUUUUUCACCUUU--AACAGCUUGGCGGCUUCGUCGUACUGAGGUGGUGGCGG-UUUUCCAUCCUCUG----------- -----------------------...--.((((....))))..((((((..--..(((..(((((....)))))..))))))))).((.((-........)).)).----------- ( -16.30, z-score = -0.03, R) >triCas2.ChLG3 6552663 112 + 32080666 AUCUCCAACACAUCGUCAACAGUCUGACUCUUGACGUUGUUCUUCUUGUUG--AUUUGCUUCGUGGCUUCUUCGUAGAGAGGCGGCGGUGG-CUUCACAUCUUCAAUAUAUUCCG-- .........(((.((((((.((.....)).)))))).)))......(((.(--(...(((((((.(((((((....))))))).)))).))-).)))))................-- ( -29.30, z-score = -1.64, R) >consensus _____________CGGCAGAAGGCCAUUCAAAGCUGCCGCCUUGCUGGCCGCCAGCUGCUUGGUGGCCUCUUCGUACUGCGGCGGUGGUG___CUGGCGACGGCUUGAUGUCCACUU ................................((((((((..(((..((((((((....))))))))......)))..))))))))............................... (-17.77 = -17.61 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:17 2011