| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,715,366 – 2,715,465 |
| Length | 99 |
| Max. P | 0.551339 |
| Location | 2,715,366 – 2,715,465 |
|---|---|
| Length | 99 |
| Sequences | 8 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.88 |
| Shannon entropy | 0.40131 |
| G+C content | 0.49917 |
| Mean single sequence MFE | -26.00 |
| Consensus MFE | -16.06 |
| Energy contribution | -16.00 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2715366 99 + 24543557 ----------------CCAGCCCCCCUACGCUCAUCGUCCC-UUUUGGCCAACUUCGUCGCCAACUUGGUCUUCUUAAUUAGAACAAUUUACGAGGACGACAAGUGGUCUCAGCAU ----------------...((.......((((..(((((((-..(((((..........))))).(((.(((........))).))).....).))))))..))))......)).. ( -22.22, z-score = -1.10, R) >droSim1.chr3L 2271591 98 + 22553184 ----------------CCAGCCCCCCUCCGCUCAUCGUCC--UUUUGGCCAACUUCGUCGCCAACUUGGUCUUCUUAAUUAGAACAAUUUGCGAGGACGACAAGUGGUCUCAGCAU ----------------...((......(((((..((((((--(((((((..........))))).(((.(((........))).))).....))))))))..))))).....)).. ( -27.60, z-score = -2.45, R) >droSec1.super_2 2740941 98 + 7591821 ----------------AAAGCCCCCCUGCGCUCAUCGUCC--UUUUGGCCAACUUCGUCGCCAACUUGGUCUUCUUAAUUAGAACAAUUUGCGAGGACGACAAGUGGUCUCAGCAU ----------------...((.......((((..((((((--(((((((..........))))).(((.(((........))).))).....))))))))..))))......)).. ( -23.42, z-score = -0.58, R) >droYak2.chr3L 14980244 96 - 24197627 ------------------CCACUCCAACCGCUCAUCGCCC--UUUUGGCCAACUUCGUCGCCAGCUUGGUCUUCUUAAUUAGAACAAUUUGCGAGGACGACAAGUGGUCUCAGCAU ------------------........((((((..(((.((--((..((((((((........)).))))))((((.....))))........)))).)))..))))))........ ( -22.90, z-score = -0.76, R) >droEre2.scaffold_4784 2739636 96 + 25762168 ------------------CCACUCCAACCGCUCAACGCCC--UUUUGGCCAACUUCGUCGCCAACUUGGUCUUCUUAAUUAGAACAAUUUGCGAGGACGACAAGUGGUCUCAGCAU ------------------........((((((....(((.--....)))...(.((.((((.((.(((.(((........))).))).)))))).)).)...))))))........ ( -20.90, z-score = -0.55, R) >droAna3.scaffold_13337 13926430 114 - 23293914 CAGCUAUCCUUGCCCUGGCGCUCCUCACCGCACUUUUCAC--UCUGGGCCAAGUUCGUCGCCAACUUGGUCUUCUUAAUUAGAACAAUUUGCCAGGACGACAAGUGGUCUUAACAU ..(((((..(((.((((((((........)).((......--...((((((((((.......))))))))))........))........)))))).)))...)))))........ ( -29.93, z-score = -1.42, R) >dp4.chrXR_group5 91674 94 + 740492 ----------------------UCUACUUGGCCAUGUCUUGGUCUUGGCCAACUUUGUCGCCGAGUCGGGCUUCUUAAUUAGAACAAUUUGCUAGGACGGCAAGUGGUCUUAGCAU ----------------------((((((((((.(((..(((((....)))))...))).))))))).))).((((.....)))).....(((((((((.(....).))))))))). ( -30.50, z-score = -1.97, R) >droPer1.super_58 83577 94 - 410386 ----------------------UCUACUUGGCCAUGUCUUGGUCUUGGCCAACUUUGUCGCCGAGUCGGGCUUCUUAAUUAGAACAAUUUGCUAGGACGGCAAGUGGUCUUAGCAU ----------------------((((((((((.(((..(((((....)))))...))).))))))).))).((((.....)))).....(((((((((.(....).))))))))). ( -30.50, z-score = -1.97, R) >consensus __________________AGCCCCCAACCGCUCAUCGCCC__UUUUGGCCAACUUCGUCGCCAACUUGGUCUUCUUAAUUAGAACAAUUUGCGAGGACGACAAGUGGUCUCAGCAU ..............................................(((((.(((.((((((.........((((.....))))..........)).))))))))))))....... (-16.06 = -16.00 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:16 2011