| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,707,779 – 2,707,839 |
| Length | 60 |
| Max. P | 0.949366 |
| Location | 2,707,779 – 2,707,839 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 97.78 |
| Shannon entropy | 0.03061 |
| G+C content | 0.30556 |
| Mean single sequence MFE | -11.07 |
| Consensus MFE | -10.20 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2707779 60 - 24543557 GCUUUGACGUAAAUUACUUUUAUGUCUUGCAGCUUUUUAAUUUAUUUAACGGAACCAAAA ((...((((((((.....))))))))..)).............................. ( -10.20, z-score = -2.04, R) >droSec1.super_2 2733520 60 - 7591821 GCUUUGACGUAAAUUACUUUUAUGUCUUGCAGCUUUUUAAUUUAUUUGACGGAACCGAAA ((...((((((((.....))))))))..))...................((....))... ( -11.50, z-score = -2.50, R) >droSim1.chr3L 2264114 60 - 22553184 GCUUUGACGUAAAUUACUUUUAUGUCUUGCAGCUUUUUAAUUUAUUUGACGGAACCGAAA ((...((((((((.....))))))))..))...................((....))... ( -11.50, z-score = -2.50, R) >consensus GCUUUGACGUAAAUUACUUUUAUGUCUUGCAGCUUUUUAAUUUAUUUGACGGAACCGAAA ((...((((((((.....))))))))..)).............................. (-10.20 = -10.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:15 2011