| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,623,864 – 2,623,967 |
| Length | 103 |
| Max. P | 0.771555 |
| Location | 2,623,864 – 2,623,967 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 84.03 |
| Shannon entropy | 0.30938 |
| G+C content | 0.40375 |
| Mean single sequence MFE | -14.10 |
| Consensus MFE | -9.60 |
| Energy contribution | -10.80 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2623864 103 - 24543557 CUCAUCAUUCUUCCGAACAUCGCAGUGCCAUCAAUCAAAGCUGUCUGCGUUUGUCUAGUGAUAAAUCCUCUAAGUGCAUUCCGAAUCCAAUUACCAAUCAAUC ...................(((.((((((..........((.....))(((((((....))))))).......).))))).)))................... ( -14.60, z-score = -1.16, R) >droSim1.chr3L 2179306 99 - 22553184 ---CUCAUUCUUCU-AACAUCGCAGUGCCAUCAAUCAAAGCUGUCUGCGUUUGUCUAGUGAUAAAUCCUCUAAGUGCAUUCCGAAUCCAAUUACCAAUCAAUC ---...........-....(((.((((((..........((.....))(((((((....))))))).......).))))).)))................... ( -14.60, z-score = -1.77, R) >droSec1.super_2 2647569 99 - 7591821 ---CUCAUUCUUCU-AACAUCGCAGUGCCAUCAAUCAAAGCUUACUGCGUUUGUCUAGUGAUAAAUCCUCUAAGUGCAUUCCGAAUCCAAUUACCAAUCAAUC ---...........-....(((.(((((...........(((((..(.(((((((....))))))).)..)))))))))).)))................... ( -15.50, z-score = -2.47, R) >droYak2.chr3L 14884373 99 + 24197627 ---CUCAUUAUCCU-AAUAUCGCAGUGCCAUCAAUCACAGCUGUCUGCGUUUGUCUAGUGAUAAAUCCUCUUACUGCAUUCCGCAUCCAAUUACCAAUCAAUC ---....(((((((-((((.(((((.((...........))...)))))..))).))).)))))..........(((.....))).................. ( -14.80, z-score = -2.03, R) >droEre2.scaffold_4784 2642509 99 - 25762168 ---CUCAUUCUGCU-AAAAUCGCAGUGCCAUCAAUCAAAGCUGUCUGCGUUUGCCUAGUGAUAAAUCCUCUAAAUGCAUUCCGAAUCCAAUUACCAAUCAAUC ---.(((((..((.-.....(((((.((...........))...)))))...))..))))).......................................... ( -12.30, z-score = -0.53, R) >droAna3.scaffold_13337 13836567 90 + 23293914 ------------CUUAGUGUUCUCCAGCCAUCCAUCAAUG-UGUCCACGUUUGUCUAACGACAAAUCCACUAAAUGCAUUUCCAAUUCAAUUACCAAUCAAUC ------------.((((((.......(((((......)))-.))....(((((((....))))))).)))))).............................. ( -12.80, z-score = -3.17, R) >consensus ___CUCAUUCUUCU_AACAUCGCAGUGCCAUCAAUCAAAGCUGUCUGCGUUUGUCUAGUGAUAAAUCCUCUAAGUGCAUUCCGAAUCCAAUUACCAAUCAAUC ...................(((.(((((...........((.....))(((((((....))))))).........))))).)))................... ( -9.60 = -10.80 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:09 2011