| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,621,917 – 2,622,011 |
| Length | 94 |
| Max. P | 0.734394 |
| Location | 2,621,917 – 2,622,011 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 77.78 |
| Shannon entropy | 0.42514 |
| G+C content | 0.57540 |
| Mean single sequence MFE | -27.15 |
| Consensus MFE | -18.31 |
| Energy contribution | -18.81 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2621917 94 - 24543557 CAUGGAGUCCAAGUCCGAGUCCGAGCCAAGUGGCACACCACGUAACCAGCAGAUAGCAGAUACAAGAUUGCCGGUCCGGGUACGGAACUUGCCC .........((((((((..((((..((..((((....))))(((.(..((.....)).).))).........))..))))..))).)))))... ( -28.10, z-score = -1.31, R) >droSim1.chr3L 2177326 88 - 22553184 ------CAAGGAGUCCGAGUCCGAGCCAAGUGGCACACCACGUAACCAGCAGAUAGCAGAUACAAGAUUGCUGGUCCGGGUACGGAACUUGCCC ------((((...((((..((((......((((....))))...((((((((....(........).)))))))).))))..)))).))))... ( -29.40, z-score = -2.20, R) >droSec1.super_2 2645589 88 - 7591821 ------CAAGGAGUCCGAGUCCGAGCCAAGUGGCACACCACGUAACCAGCAGAUAGCAGAUACAAGAUUGCUGGUCCGGGUACGGAACUUGCCC ------((((...((((..((((......((((....))))...((((((((....(........).)))))))).))))..)))).))))... ( -29.40, z-score = -2.20, R) >droYak2.chr3L 14882292 94 + 24197627 CAAGGAGUCCGAGUCCGAGUCCCAGCCAAGUGGCACGCCACGUAGCCAGCAGAUAGCAAAUACAAGAUUGCUGCUCCGGGUACGGAACUUGCCC ((((...((((..((((.(...((((...((((....))))(((....((.....))...)))......))))..)))))..)))).))))... ( -29.40, z-score = -1.38, R) >droEre2.scaffold_4784 2640531 88 - 25762168 ------CAAGGAGUCCAGGUCCGAGCCAAGUGGCACACCACGUAACCAGCAGAUAGCAGAUACAAGAUGGCUGCUCCGGGUACGGAACUUGCCC ------...(((((.........(((((.((((....))))(((.(..((.....)).).)))....))))))))))(((((.......))))) ( -24.60, z-score = -0.11, R) >droAna3.scaffold_13337 13834839 78 + 23293914 --AAAGCAGUCGAACCGAGUCCAGGACAAGUGGCAGACCACGUAACCGACA----------ACCGUAUAGCCG----GGGAGCGGAACUUGGUC --...........(((((((((.((....((((....))))....))(...----------.(((......))----)....))).))))))). ( -22.00, z-score = -0.43, R) >consensus ______CAAGGAGUCCGAGUCCGAGCCAAGUGGCACACCACGUAACCAGCAGAUAGCAGAUACAAGAUUGCUGGUCCGGGUACGGAACUUGCCC ...............((((((((.(((..((((....)))).....((((...................)))).....))).))).)))))... (-18.31 = -18.81 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:08 2011