| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,619,621 – 2,619,741 |
| Length | 120 |
| Max. P | 0.978173 |
| Location | 2,619,621 – 2,619,741 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.58 |
| Shannon entropy | 0.33237 |
| G+C content | 0.35953 |
| Mean single sequence MFE | -31.25 |
| Consensus MFE | -18.79 |
| Energy contribution | -20.86 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2619621 120 + 24543557 GAAAUCAAGGAUGCAUCUCGAGAGUAUCAAGAACGUGCUCUAAAGGUAUGCAAGCACAUUUUUUGAAUGCAAAAGUCGAAUUGAAUAUGCACUGCAUACUUUUAGACACCUGGCAUUCUU ......((((((((.(((.((.....)).)))..(((.((((((((((((((.(((.(((((((((.(.....).)))))..)))).)))..)))))))))))))))))...)))))))) ( -37.90, z-score = -3.95, R) >droYak2.chr3L 14879902 108 - 24197627 GAAAUCAAGGAUGCAUCUCAAGAAUAUAUCGAAGGUGCUCUAAGGGUAUGCAAGCACAUUUUUUGA-----------CAGCUUAA-AUUCACUGCAUACUUCUAAACACCUUGCAGUUUA .....(((((..((((((...((.....))..))))))..((..(((((((((((.((.....)).-----------..)))...-......))))))))..))....)))))....... ( -23.60, z-score = -1.33, R) >droSec1.super_2 2643281 112 + 7591821 GAAAUCAAGGA--------AGGAGUAUCAAGAAGGUGCUCUAGAAGUGUGCAAGCACACUUUUUGAAUGCAAAAGUCUAAUUUAAUAUUCACUGCAUACUUUUAGACACCUUGCAUUUUU ((((((((((.--------.((((((((.....))))))))(((((((((....)))))))))...........((((((.....................)))))).))))).))))). ( -31.50, z-score = -3.06, R) >droSim1.chr3L 2174952 116 + 22553184 GAAAUCAAGGAUGCAUCUCAAGAGUAUCAAGAAGGUGCUCUAGAAGUGUGCAAGCACAUUUUUUGAAUGCAAAAGUCAAAUUUAAUAUUCACUGCAUACUUU-AGAC---UUGCAUUUUU ......(((((((((..((.((((((((.....)))))))).((((((((((.(.........((((((..(((......)))..)))))))))))))))))-.)).---.))))))))) ( -32.00, z-score = -2.74, R) >consensus GAAAUCAAGGAUGCAUCUCAAGAGUAUCAAGAAGGUGCUCUAAAAGUAUGCAAGCACAUUUUUUGAAUGCAAAAGUCAAAUUUAAUAUUCACUGCAUACUUUUAGACACCUUGCAUUUUU ......((((((((......((((((((.....))))))))(((((((((((..........((((((...........)))))).......))))))))))).........)))))))) (-18.79 = -20.86 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:07 2011