| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,591,812 – 2,591,913 |
| Length | 101 |
| Max. P | 0.532939 |
| Location | 2,591,812 – 2,591,913 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 67.60 |
| Shannon entropy | 0.50007 |
| G+C content | 0.34057 |
| Mean single sequence MFE | -16.40 |
| Consensus MFE | -9.35 |
| Energy contribution | -9.60 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2591812 101 + 24543557 UUGCUCUUCGCCCUGAUGAGUAACUACCUGAUGAAGUUAGUCAUCACUAUUCAGGCAUCUUAGUACAAUUUG-UAACAGUGUAAUCUUGUUUAAUAUUCUCA------------ ((((.((..(((.((((((.(((((.........))))).)))))).......))).......(((.....)-))..)).))))..................------------ ( -16.20, z-score = 0.27, R) >droEre2.scaffold_4784 2608210 100 + 25762168 -------------UUAUGACUAACUACCUCAUUAAGUUAGUCAUCAGUAUUCAGACAUAUUAGUACAAUUUGUUAA-AGUGUAAUCUUGCUUAAUAUCCUCACACCCAUUUGCU -------------..((((((((((.........)))))))))).((((.....((((.((((((.....))))))-.)))).....))))....................... ( -14.80, z-score = -1.16, R) >droSec1.super_2 2612031 96 + 7591821 AUGUUCUUUGCCCUGAUGAGUAACUACCUCAUUAAGUUAGUCAUCACUAUCA------CUUAGUACAAUUUGGUAACAGUGUAAUCUUGUUUAAUAUUCCGA------------ .((..(((((((..(((((.(((((.........))))).)))))((((...------..)))).......))))).))..))...................------------ ( -16.50, z-score = -0.80, R) >droSim1.chr3L 2147044 80 + 22553184 AUGUUCUUUGCCCUGAUGAGUAACUACCUCAUUAAGUUAGUCAUCACUAUCA------CUUAGUACAAUUUGGUAACAG----AUUCCGA------------------------ ....((((((((..(((((.(((((.........))))).)))))((((...------..)))).......))))).))----)......------------------------ ( -18.10, z-score = -2.35, R) >consensus AUGUUCUUUGCCCUGAUGAGUAACUACCUCAUUAAGUUAGUCAUCACUAUCA______CUUAGUACAAUUUGGUAACAGUGUAAUCUUGUUUAAUAUUCUCA____________ .............((((((.(((((.........))))).)))))).................................................................... ( -9.35 = -9.60 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:06 2011