| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,576,544 – 2,576,635 |
| Length | 91 |
| Max. P | 0.989704 |
| Location | 2,576,544 – 2,576,635 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 91.07 |
| Shannon entropy | 0.14989 |
| G+C content | 0.42248 |
| Mean single sequence MFE | -17.98 |
| Consensus MFE | -17.00 |
| Energy contribution | -16.80 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2576544 91 + 24543557 UUUCUUUGUCUGAACUUUGCCUCCU----GGCCACCGUUCUCAAUUUCCAGUUGACCACGUUUUUAAAGUCAGACUUCUCAUUAUAAGUUCCACA .......((((((.(((((((....----)))...(((..(((((.....)))))..))).....)))))))))).................... ( -19.20, z-score = -3.33, R) >droEre2.scaffold_4784 2593067 88 + 25762168 UUUCUUUGUCUGAACUUUGCCUCCU----GGCCAGCGUCUUCAAUUUCCAGUUGACCACGUUU--GAAGUCAGACUUCUCAUUAUAAGUUCCAC- .......((((((.(((((((....----))).(((((..(((((.....)))))..))))).--))))))))))...................- ( -21.70, z-score = -3.04, R) >droYak2.chr3L 14834976 88 - 24197627 UUUCUUUGUCUGAACUUUGCCUCCU----GGCCACCGUCCUCAAUUUCCAGUUGACCACGUUU--AAAGUCAGACUUCUCAUUAUAAGUUCCAC- .......((((((.(((((((....----)))...(((..(((((.....)))))..)))...--))))))))))...................- ( -19.20, z-score = -3.39, R) >droSec1.super_2 2596970 86 + 7591821 UUUCUUUGUCUGAACUUUGCC--------GGCCACCUUUCUUAAUUUCCAGUUGACCACGUUUUUGAAGUCAGACUUCUCAUUAUAACUUCCAC- .......((((((.((((((.--------((.((.((............)).)).))..))....))))))))))...................- ( -10.20, z-score = -0.16, R) >droSim1.chr3L 2131533 94 + 22553184 UUUCUUUGUCUGAACUUUGCCUCCUGGCCGGCCACCGUUCUCAAUUUCCAGUUGACCACGUUUUUGAAGUCAGACUUCUCAUUAUAACUUCCAC- .......((((((.(((((((....))).......(((..(((((.....)))))..))).....))))))))))...................- ( -19.60, z-score = -2.24, R) >consensus UUUCUUUGUCUGAACUUUGCCUCCU____GGCCACCGUUCUCAAUUUCCAGUUGACCACGUUUUUGAAGUCAGACUUCUCAUUAUAAGUUCCAC_ .......((((((.(((((((........)))...(((..(((((.....)))))..))).....)))))))))).................... (-17.00 = -16.80 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:05 2011