| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,572,455 – 2,572,563 |
| Length | 108 |
| Max. P | 0.647275 |
| Location | 2,572,455 – 2,572,563 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 88.08 |
| Shannon entropy | 0.22825 |
| G+C content | 0.44786 |
| Mean single sequence MFE | -31.52 |
| Consensus MFE | -23.17 |
| Energy contribution | -24.37 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2572455 108 + 24543557 CCGUUCAUUGAACCACUUAACAGGCUUUUUAGCACUUGGCUGCAUUUCAUUAAAUUGAAUUUUCCCAGCC-GUCAGCAGAGGAGUGUGUCUGAGUGAGCGGGUGAAUUC ..(((((((....(((((((((.(((((((.((...((((((...((((......))))......)))))-)...)).))))))).))).))))))....))))))).. ( -34.20, z-score = -2.32, R) >droSim1.chrU 2454563 108 - 15797150 CCGUUCAUUGAACCACUUAACAGGCUUUUUAGCACUUGGCUGCAUUUCAUUAAAUUGAAUUUUCCCAGCC-GUCAGCAGAGGAGUGUGUCUGAGUGAGCGGGUGAGUUC ((((((........((((((((.(((((((.((...((((((...((((......))))......)))))-)...)).))))))).))).)))))))))))........ ( -33.80, z-score = -2.04, R) >droSec1.super_2 2592940 108 + 7591821 CCGUUCAUUGAACCACUUAACAGGCUUUUUAGCACUUGGCUGCAUUUCAUUAAAUUGAAUUUUCCCAGCC-GUCAGCAGAGGAGUGUGUCUGAGUGAGCGGGUGAGUUC ((((((........((((((((.(((((((.((...((((((...((((......))))......)))))-)...)).))))))).))).)))))))))))........ ( -33.80, z-score = -2.04, R) >droYak2.chr3L 14830821 96 - 24197627 UCGUUCAUUGAACCACUUAACAGGCUUUUUAGCACUUGGCUGCAUUUCAUUAAAUUGAAUUUUCCCAGCC-GUCAGCAGAGGAGUGUGUCUGAGUUC------------ ..((((...)))).((((((((.(((((((.((...((((((...((((......))))......)))))-)...)).))))))).))).)))))..------------ ( -27.30, z-score = -2.26, R) >droEre2.scaffold_4784 2588891 108 + 25762168 CCGUUCAUUGAACCACUUAACAGGCUUUUUAGCACUUGGCUGCAUUUCAUUAAAUUGAAUUUUCCCAGCC-GUCAGCAGAGGAGUGUGUCUGAGUGAGCGGGUGAGUUC ((((((........((((((((.(((((((.((...((((((...((((......))))......)))))-)...)).))))))).))).)))))))))))........ ( -33.80, z-score = -2.04, R) >droAna3.scaffold_13337 21522958 103 - 23293914 UCUUUCAAUGGACCACUUAACUGGCUUUUUAGCACUUGGCUGCAUUUCAUUAAAUUGAAUUUUCCAAGCCUGCUGGAGGAGUAGUGUGUUGGAGUCUCAGUCU------ ...................(((((..(((((((((...(((((..((((......))))(((((((.(....))))))))))))))))))))))..)))))..------ ( -26.20, z-score = -0.24, R) >consensus CCGUUCAUUGAACCACUUAACAGGCUUUUUAGCACUUGGCUGCAUUUCAUUAAAUUGAAUUUUCCCAGCC_GUCAGCAGAGGAGUGUGUCUGAGUGAGCGGGUGAGUUC ..((((...))))(((((((((.(((((((.((....(((((...((((......))))......))))).....)).))))))).))).))))))............. (-23.17 = -24.37 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:04 2011