| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,563,075 – 2,563,161 |
| Length | 86 |
| Max. P | 0.903955 |
| Location | 2,563,075 – 2,563,161 |
|---|---|
| Length | 86 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 82.11 |
| Shannon entropy | 0.30708 |
| G+C content | 0.33491 |
| Mean single sequence MFE | -17.45 |
| Consensus MFE | -13.63 |
| Energy contribution | -14.23 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2563075 86 - 24543557 CCCAU-AUAUCUUU-CGAAUAACU---ACAUACCUGGGUUGGUACAUAUAUUUCUGAGACAACUGAUCAAAAUCAGAGAUAUAUAUAUCAA ((((.-.(((....-.........---..)))..))))((((((.((((((((((((...............)))))))))))).)))))) ( -18.82, z-score = -2.28, R) >droSim1.chr3L 2118179 86 - 22553184 CCCAU-AUAUCUCU-CGAAUACCU---ACAUACCUGGGUUGGUACAUAUAUUUCCGAGACCACUGAUCAAAAUCAGAGAUAUAUAUAUCAA ...((-((((((((-((.......---...((((......))))..........)))))...(((((....))))).)))))))....... ( -18.35, z-score = -1.80, R) >droSec1.super_2 2583679 86 - 7591821 CCCAU-AUAUCUCU-CGAAUACCU---ACAUACCUGGGUUGGUACAUAUAUUUCCGAGACCACACAUCAAAAUCAGAGAUAUAUAUAUCAA ...((-((((((((-.((..((((---(......)))))((((...............))))..........))))))))))))....... ( -16.76, z-score = -1.84, R) >droYak2.chr3L 14821025 91 + 24197627 CCCAUAAUAUAUAUACAUAUAUCUCUCGAAUACCUGGGCUGGUACGCAUAUUUCUGUGACAACUGAUCUUAAUCAGAAAUAUAUAUAUCAA ......(((((((((...............((((......))))((((......))))....(((((....)))))...)))))))))... ( -14.90, z-score = -0.82, R) >droEre2.scaffold_4784 2579258 81 - 25762168 CCCAU-AUACAUAU---UAUAUCUCUCGAAUACCUGGGCUGGUACAUAUAUUUCUGAGACAACUG------AUCAGAAAUAUAUAUAUGAA ..(((-(((.....---.............((((......))))..(((((((((((........------.))))))))))))))))).. ( -18.40, z-score = -2.27, R) >consensus CCCAU_AUAUCUAU_CGAAUACCU___ACAUACCUGGGUUGGUACAUAUAUUUCUGAGACAACUGAUCAAAAUCAGAGAUAUAUAUAUCAA ((((..............................)))).(((((.((((((((((((...............)))))))))))).))))). (-13.63 = -14.23 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:03 2011