| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,549,371 – 2,549,461 |
| Length | 90 |
| Max. P | 0.524436 |
| Location | 2,549,371 – 2,549,461 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 69.60 |
| Shannon entropy | 0.52105 |
| G+C content | 0.51645 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -10.98 |
| Energy contribution | -10.71 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2549371 90 + 24543557 GUGAGCCGGCGGUUGGAAAAACUUUUGUCAUUAUGCAGGCAGUGCUUU-CUCUAA-AUUUCCCGACCGCCC-CCACUUCCUGUCCCUCUCAUC---------------------- (((((..(((((((((..........(((........)))((......-..))..-.....))))))))).-..((.....))....))))).---------------------- ( -20.60, z-score = -0.90, R) >droAna3.scaffold_13337 561067 115 + 23293914 GUGGGGUGUGCGACGAAAAAACUUUUGUCAUUAUUCGGGCAAUGUUUUUCUCCGACACUUGCCGCUCUUCCGGCCCUCCGCCUUCUACCCACACUUCCUGCCCCUCAGUCUCAUG (.((((((.(((((((((....)))))))........(((((((((.......)))).))))))).)....(((.....))).................))))).)......... ( -30.50, z-score = -2.27, R) >droEre2.scaffold_4784 2565410 89 + 25762168 GUGAACCGGCGGUUGGAAAAACUUUUGUCAUUAUGCAGGCAGUGCUUU-CUCUAA-AUUUUCCACCCGCCCUCCGCUUCCUGCCCCCCAUC------------------------ (((....(((((.(((((((......(((........)))((......-..))..-.))))))).)))))...)))...............------------------------ ( -20.30, z-score = -1.14, R) >droYak2.chr3L 14807208 71 - 24197627 GUGAACCGGUGGUUGGAAAAACUUUUGUCAUUAUGCUGGCAGUGCUUU-CUCUAA-AUUUUCCGCCCGCCA-UC----------------------------------------- .......(((((.(((((((......((((......))))((......-..))..-.))))))).))))).-..----------------------------------------- ( -18.40, z-score = -1.63, R) >droSec1.super_2 2570091 90 + 7591821 GUGAGCCGGCGGUUGGAAAAACUUUUGUCAUUAUGCAGGCAGUGCUUU-CUCUAA-AUUUCCCGCCCGCCC-CGACUUCCUGUUCCUCUCAUC---------------------- ..((((.((.((((((.........(((......)))(((.(.((...-......-.......))).))))-))))).)).))))........---------------------- ( -19.49, z-score = -0.14, R) >droSim1.chr3L 2105261 90 + 22553184 GUGAGCUGGCGGUUGGAAAAACUUUUGUCAUUAUGCAGGCAGUGCUUU-CUCUAA-AUUUCCCGCCCGCCC-CCACUUCCUGUCCCUCUCAUC---------------------- (((.((.((((((((((.(((...(((((........)))))...)))-.)))))-.....))))).))..-.))).................---------------------- ( -20.10, z-score = -0.73, R) >consensus GUGAGCCGGCGGUUGGAAAAACUUUUGUCAUUAUGCAGGCAGUGCUUU_CUCUAA_AUUUCCCGCCCGCCC_CCACUUCCUGUCCCUCUCAUC______________________ .......(((((.(((.(((....(((((........)))))...............))).))).)))))............................................. (-10.98 = -10.71 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:01 2011