| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,545,130 – 2,545,243 |
| Length | 113 |
| Max. P | 0.595350 |
| Location | 2,545,130 – 2,545,243 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.42 |
| Shannon entropy | 0.45978 |
| G+C content | 0.42311 |
| Mean single sequence MFE | -26.11 |
| Consensus MFE | -13.73 |
| Energy contribution | -13.52 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2545130 113 - 24543557 UACAAUUAUCUGGCGAGAUCUAUUUUUCCCGGUGCAACUUUGUUCAUCUCUCUUCUGCACAAUUAAAAAUUCUUUGUGCACUGACCACGAUUCGCACUCUGGCGGAGAUUGAG---- .((((....((((.((((......)))))))).......))))(((((((((...(((((((...........)))))))..))........(((......))))))).))).---- ( -24.40, z-score = -1.01, R) >droEre2.scaffold_4784 2559939 111 - 25762168 UGCAAUUAUCGUUUGAAAGCCAUUUUUCCCAGUGCAACUUUGUUCAUCUCUC--CUGCACAAUUAAAAAUUCUUUGUGCACUGACCACGAUUCGCACUCUGGCGAAGAUUGAG---- ..(((((.(((((.(((((....)))))..(((((....((((...((....--.(((((((...........)))))))..))..))))...)))))..))))).)))))..---- ( -22.40, z-score = -0.80, R) >droYak2.chr3L 14802719 111 + 24197627 UGCAAUCAUCGUUUAAAAUCCAUUUUUCGCAGUGCAACUUUGUUCGCCUCUC--CUGCACAAUUAAAAAUUCUUUGUGCACUGGCCACGAUUCGCACUCCGGCGAAGAUUGAG---- ..(((((.((((..((((.....))))((.(((((....((((..(((....--.(((((((...........)))))))..))).))))...))))).)))))).)))))..---- ( -29.70, z-score = -2.76, R) >droSec1.super_2 2565904 113 - 7591821 UACAAUCAUCUGGAGAUAUAUAUUUUUCCCAGUGCAACUUUGUUCAGCUCUCUCCUGCACAAUUAAAAAUUCUUUGUGCACUGGCCACGAUUCGCACUCUGGCGGAGAUUGAG---- ..(((((.((((((((........)))))(((((((...((((.(((.......))).))))..............)))))))((((.((.......))))))))))))))..---- ( -28.93, z-score = -2.03, R) >droSim1.chr3L 2101081 113 - 22553184 UACAAUUAUGUUGCAAGAUUAAUUUUUUUCAGUGCAACUUUGUUCAUCUCUCUUCUUCACAAUUAAAAAUUCUUUGUGCACUGGCCACGAUUCGCACUCUGGCGGAGAUUGAG---- .((((....((((((.((..........))..)))))).))))((((((((......(((((...........))))).....((((.((.......))))))))))).))).---- ( -22.20, z-score = -0.79, R) >dp4.chrXR_group6 12537157 104 - 13314419 UGCAGUCUCUUGCUGUUGUUUAUUCUUUCU-CUGGGAUGUUG--CAUCUUU---CUGUGGAAUC----AUGCCUUUCGCCAUGAUUCGCACUCGCACUC---GGAAGAUUGAGCUGU .((((.(((.(((...(((.((((((....-..))))))..)--)).....---..((((((((----(((.(....).)))))))).)))..))).((---....))..))))))) ( -29.00, z-score = -1.22, R) >consensus UACAAUCAUCUGGUGAAAUCUAUUUUUCCCAGUGCAACUUUGUUCAUCUCUC__CUGCACAAUUAAAAAUUCUUUGUGCACUGACCACGAUUCGCACUCUGGCGAAGAUUGAG____ ..(((((......................(((((((....))).............((((((...........)))))))))).......(((((......))))))))))...... (-13.73 = -13.52 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:58:01 2011