| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,168,059 – 4,168,157 |
| Length | 98 |
| Max. P | 0.804355 |
| Location | 4,168,059 – 4,168,157 |
|---|---|
| Length | 98 |
| Sequences | 9 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 61.16 |
| Shannon entropy | 0.80437 |
| G+C content | 0.40615 |
| Mean single sequence MFE | -17.88 |
| Consensus MFE | -8.68 |
| Energy contribution | -9.04 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.42 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4168059 98 - 23011544 ---------CUUUCGACAUUUUUUUUUUGUCUUUUUUAGGCCUAGUCGUGUGGCCUACAAAUCGUCCCCUGAAUGCGGUUAAAACUGUCAGGCCAUAAGUUUACACA- ---------.....((((.........)))).(((.((((((.........)))))).)))......((((...(((((....)))))))))...............- ( -19.70, z-score = -0.73, R) >droSim1.chr2L 4123817 106 - 22036055 CUUUCCAC-AUUUUUUGGUUUUUUUUUAGUCUUUUUUAGGCCUAGUCGUGUGGCCUACAAAUCGUCCCCUGAAUGCGGUUAAAACUGUCAGGCCAUAAGUUUACACA- ....(((.-......)))..........((((.....)))).......(((((((((((((((((.........)))))).....))).))))))))..........- ( -18.90, z-score = 0.12, R) >droSec1.super_5 2267935 107 - 5866729 CUUUCCUCAAUUUUUUUGUUUUUUUUUGUCUUUUUUUAGGCCUAGUCGUGUGGCCUACAAAUCGUCCCCUGAAUGCGGUUAAAACUGUCAGGCCAUAAGUUUACACA- ...........................((((......)))).......(((((((((((((((((.........)))))).....))).))))))))..........- ( -18.50, z-score = -0.45, R) >droYak2.chr2L 4194800 99 - 22324452 --------CUUUCCUUUUUUUUUUGGUUGUCUUUUUUAGGCCUAUUCGUGUGGCCUACAAAUCGUCCCCUGAAUGCGGUUAAAACUGUCAGGCCAUAAGUUUACACA- --------................((.((...(((.((((((.........)))))).))).)).))((((...(((((....)))))))))...............- ( -18.90, z-score = -0.36, R) >droEre2.scaffold_4929 4235753 105 - 26641161 --CUUUCUUCAUUUUUUUUUUCGCUUUUUGUCUUUUUAGGCCUAGCCGUGUGGCCUACAAAUCGUCCCCUGAAUGCGGUUAAAACUGUCAGGCCAUAAGUUUACACA- --....................(((....((((....))))..)))..(((((((((((((((((.........)))))).....))).))))))))..........- ( -21.10, z-score = -1.11, R) >droAna3.scaffold_12943 740747 82 + 5039921 -------------------------CUUAUUUUUUUUGGGCCUGGUCGUGUGGCCUACAAAUCGUCCUCUGAAUGCGGUUGAAACUGUCAGGCCAUAAGUUUACACA- -------------------------.............(((((((.((..((.....))...)).)).......(((((....))))).))))).............- ( -17.70, z-score = 0.27, R) >droWil1.scaffold_180703 1766228 75 + 3946847 ----------AUAUUCUUUUU---UUUUUGUGUUUUAACAUC-----GUUUGGCCUACAAAUCGGCCUCUGAAUGUGGUGAUAA--GUUUACCCA------------- ----------((((((.....---....(((......)))..-----....((((........))))...))))))(((((...--..)))))..------------- ( -15.30, z-score = -1.93, R) >droVir3.scaffold_12963 11182342 76 + 20206255 -------------------------------CUCUCGAUAUUUGCUUUUGUUCCC-ACAAAUCGAGUAAUCAAUGUGGUUGUCGCUGCCAGGGCAUAAGUUUUGUUCA -------------------------------.....((.....((((.((..(((-.......((....))....((((.......))))))))).)))).....)). ( -13.80, z-score = 0.00, R) >droMoj3.scaffold_6500 2297927 85 - 32352404 ---------------UCUUGCCUGUUUUUUCAUGUUCUUUUUUAGCUUUGCUGCC-ACAAAUCGAGUCAUCAAUGUGGCUGUCGCUGCGAGGCCAUAAGUU------- ---------------................(((..(((...((((...((.(((-(((....((....))..)))))).)).)))).)))..))).....------- ( -17.00, z-score = 0.41, R) >consensus __________UUUUUUUUUUUUUUUUUUUUCUUUUUUAGGCCUAGUCGUGUGGCCUACAAAUCGUCCCCUGAAUGCGGUUAAAACUGUCAGGCCAUAAGUUUACACA_ ................................................(((((((......(((.....)))..(((((....)))))..)))))))........... ( -8.68 = -9.04 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:37 2011