| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,527,304 – 2,527,415 |
| Length | 111 |
| Max. P | 0.783580 |
| Location | 2,527,304 – 2,527,415 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.84 |
| Shannon entropy | 0.29207 |
| G+C content | 0.38596 |
| Mean single sequence MFE | -27.42 |
| Consensus MFE | -19.36 |
| Energy contribution | -20.40 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2527304 111 + 24543557 CCUCCAAAUACACGAAUGUAUAUAUAUAAAUACAUCUCUGAAUUGGACCUUUGGGGAUCUUUACUGGGGAGAUGGAGCAGACAUGCGACACAUAUGUACAUAUAUAUUUUG------ ...............((((((((((.......(((((((.....(((((.....)).))).......)))))))..(((....))).....))))))))))..........------ ( -23.90, z-score = -1.23, R) >droSim1.chr3L 2081248 105 + 22553184 CCUCCAAAUACACGUAUGUGUAUAUA------CAUCUCUGAAUUGGACCUUUGGGGAUCUUUAGUGGGGAGAUGGAGCAGACAUGCGACACAUACCUAUACAUUUCGUUUU------ .............((((((((.....------(((((((..((((((((.....))...))))))..)))))))..(((....))).))))))))................------ ( -26.70, z-score = -1.07, R) >droSec1.super_2 2548249 102 + 7591821 CCUCCAAAUACACGUAUGUAUAUGUA------CAUCUCUGAAUUGGACCUUUGGGGAUCUUUAGUGGGGAGAUGGAGCAGACAUGCGACACAUACAUAUAAAUUUUUU--------- .............((((((((.(((.------(((((((..((((((((.....))...))))))..)))))))..(((....))).))).)))))))).........--------- ( -26.00, z-score = -1.73, R) >droYak2.chr3L 14784171 108 - 24197627 CCUCCAAAUACGCGUAUGUAUAUGUA------CAUCUCUUCAUUGGACCCUUGGGGAUCUUUAGUGGGGAGAUGGAGCAGACAUGCGACAUAUUUAUAUGUAUAUAUACUAUAU--- .......(((..((((((.((((((.------((((((((((((((((((...)))...)))))))))))))))..(((....))).)))))).))))))..))).........--- ( -35.50, z-score = -3.15, R) >droEre2.scaffold_4784 2540057 111 + 25762168 CCUCCAAAUACACGAAUGUAUAUGUA------CAUCUCUGAAUUGGACCUUUGGGAAUCUUUAGUGGCGAGAUGGAGCAGACAUGCGACAUACUUAUAUAUACAUUUUCUUUUUUUU .............(((((((((((((------((((((...((((((((....))....))))))...))))))..(((....)))........))))))))))))).......... ( -25.00, z-score = -2.03, R) >consensus CCUCCAAAUACACGUAUGUAUAUGUA______CAUCUCUGAAUUGGACCUUUGGGGAUCUUUAGUGGGGAGAUGGAGCAGACAUGCGACACAUAUAUAUAUAUAUAUUCUU______ .............((((((((((((.......(((((((..((((((((....))....))))))..)))))))..(((....))).....)))))))))))).............. (-19.36 = -20.40 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:56 2011