| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,514,061 – 2,514,166 |
| Length | 105 |
| Max. P | 0.863080 |
| Location | 2,514,061 – 2,514,166 |
|---|---|
| Length | 105 |
| Sequences | 13 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 82.31 |
| Shannon entropy | 0.40823 |
| G+C content | 0.54868 |
| Mean single sequence MFE | -40.43 |
| Consensus MFE | -22.38 |
| Energy contribution | -21.88 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.863080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2514061 105 + 24543557 -CUCAAUGAGAUUCUUGAUGCUGGUCGG-CGAUGUUGCUGUGGCAACAACGGUAGCAACUGCCACGCCCACGCUGGGGGCGGC---GUUGAGUAUUUGCUCGACUUCCUU -.....((((...((..((((.....((-((.((((((((((....).)))))))))..)))).(((((.......)))))))---))..))......))))........ ( -40.30, z-score = -1.75, R) >droSim1.chr3L 2067893 105 + 22553184 -CUCAAUGAGAUUCUUGAUGCUGGUCGG-CGAUGUUGCUGUGGCAACAACGGUAGCAACUGCCACGCCCACGCUGGGGGCGGC---GUUGAGUAUUUGCUCGACUUCCUU -.....((((...((..((((.....((-((.((((((((((....).)))))))))..)))).(((((.......)))))))---))..))......))))........ ( -40.30, z-score = -1.75, R) >droSec1.super_2 2535316 105 + 7591821 -CUCAAUGAGAUUCUUGAUGCUGGUCGG-CGAUGUUGCUGUGGCAACAACGGUAGCAACUGCCACGCCCACGCUGGGGGCGGC---GUUGAGUAUUUGCUCGACUUCCUU -.....((((...((..((((.....((-((.((((((((((....).)))))))))..)))).(((((.......)))))))---))..))......))))........ ( -40.30, z-score = -1.75, R) >droYak2.chr3L 14770604 105 - 24197627 -CUCAAUGAGAUUCUUGAUGCUGGUCGG-CGAUGUUGCUGUGGCAACAACGGUAGCAACUGCCACGCCCACGCUGGGGGCGGC---GUUGAGUAUUUGCUCGACUUCCUU -.....((((...((..((((.....((-((.((((((((((....).)))))))))..)))).(((((.......)))))))---))..))......))))........ ( -40.30, z-score = -1.75, R) >droEre2.scaffold_4784 2526744 105 + 25762168 -CUCGAUGAGAUUCUUGAUGCUGGUCGG-CGAUGUUGCUGUGGCAACAACGGUAGCAACUGCCACGCCCACGCUGGGGGCGGC---GUUGAGUAUUUGCUCGACUUCCUU -.((((..((((.((..((((.....((-((.((((((((((....).)))))))))..)))).(((((.......)))))))---))..)).))))..))))....... ( -42.70, z-score = -2.30, R) >droAna3.scaffold_13337 536241 105 + 23293914 -CUCGAUGAGAUUCUUGAUGCUGGUCGG-CGAUGUUGCUGUGGCAACAACGGCAGCAACUGCCACUCCCACGGUGGGGGCGGC---GUUGAGUAUUUGCUCGACUUCCUU -.((((..((((.((..((((((...((-((.((((((((((....).)))))))))..)))).(((((.....)))))))))---))..)).))))..))))....... ( -46.10, z-score = -3.31, R) >dp4.chrXR_group6 12495068 108 + 13314419 -CUCGAUGAGAUUCUUGAUGCUGGUCGG-GGAUGUUGCUGUGGCAACAACGGCAGCAACGGUCACACCCACACUGGGGGCAGCAGCGUUGAGUAUUUGUUCGACUUCCUU -.((((..((((.((..(((((((((..-(..(((((((((.(......).)))))))))..)...(((.....))))))..))))))..)).))))..))))....... ( -40.70, z-score = -1.90, R) >droPer1.super_33 514341 108 + 967471 -CUCGAUGAGAUUCUUGAUGCUGGUCGG-GGAUGUUGCUGUGGCAACAACGGCAGCAACGGUCACACCCACACUGGGGGCAGCAGCGUUGAGUAUUUGUUCGACUUCCUU -.((((..((((.((..(((((((((..-(..(((((((((.(......).)))))))))..)...(((.....))))))..))))))..)).))))..))))....... ( -40.70, z-score = -1.90, R) >droWil1.scaffold_180916 2103347 108 + 2700594 -CUCAAUGAGAUUCUUAAUGCUGGUCGG-UGAUGUUGCUGUGGCAACAACUGCAGCUACUGCCACACCCACACUGGGGGCAGCUGCAUUGAGUAUUUGCUCAACUUCUUU -.....((((...(((((((((((((((-(..((((((....))))))))))..))))(((((...(((.....))))))))..))))))))......))))........ ( -36.20, z-score = -1.72, R) >droVir3.scaffold_10322 303440 105 + 456481 -UUCGGUGAGAUUCUUGAUGGUAGUCGG-AGAUAUUGCUGUGGCAACAACGGCAGCAACAGCCACGCCCACGUUGGGAGACAC---GUUGAGUAUCUGCUCAACUUCUUU -....(((...((((..(((...(.((.-.(...(((((((.(......).)))))))...)..)))...)))..)))).)))---(((((((....)))))))...... ( -32.00, z-score = -0.68, R) >droMoj3.scaffold_6680 2339966 105 + 24764193 -CUCGAUGAGAUUCUUGAUGCUGGUCGG-CGAUGUUGCUGUGGCAACAACGGCAGCAACAGCCACGCCCACGUUGGGCGAGAC---GUUGAGUAUCUGUUCAACUUCUUU -...((..((((.((..(((((....((-(..((((((((((....).)))))))))...))).(((((.....))))))).)---))..)).))))..))......... ( -43.40, z-score = -3.22, R) >droGri2.scaffold_15110 24343468 106 - 24565398 GCUUAAUGGGAUUCUUGAUGCUGGUGGG-CGAAGUUGCUGUGGCAACAACGGCAGCAACAGCCACGCCCACGUUGGGAGACGA---GUUCAGUAUCUGCUCAACUUCUUU ......((((......((((((((((((-((..((((((((.(......).)))))))).....))))))).((.(....).)---)..)))))))..))))........ ( -40.20, z-score = -2.22, R) >anoGam1.chr2L 25423650 108 - 48795086 --CGGAACGGACGGUAAUUGCUGGCGGGGCCCUGCCACUACCCGUACUGCGGGUGGUUCUUCCGCUUCCGCUUUGGCUUGAUUGUUGAGCAGAAUUUGCUCCACUUCGCG --(((((((((.((........(((((....)))))((((((((.....)))))))))).)))).))))).....((..((..((.((((((...)))))).)).)))). ( -42.40, z-score = -1.81, R) >consensus _CUCGAUGAGAUUCUUGAUGCUGGUCGG_CGAUGUUGCUGUGGCAACAACGGCAGCAACUGCCACGCCCACGCUGGGGGCGGC___GUUGAGUAUUUGCUCGACUUCCUU ......((((......((((((.((.((.....(((((((((....).)))))))).....)))).(((.....))).............))))))..))))........ (-22.38 = -21.88 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:55 2011