| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,512,119 – 2,512,210 |
| Length | 91 |
| Max. P | 0.970410 |
| Location | 2,512,119 – 2,512,210 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.18 |
| Shannon entropy | 0.53698 |
| G+C content | 0.33135 |
| Mean single sequence MFE | -17.12 |
| Consensus MFE | -12.93 |
| Energy contribution | -12.85 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2512119 91 + 24543557 --UUUUCAAUGAUAUUUUCAA----AUCCAAUUACCGCUUUGUGCUGCAUUUCAAUAUC-----CACACAA-----UUUUGAAAUUCAGCAAAAGGAGAGAGAAGAG----- --(((((..(((.....))).----..........(.((((.(((((.(((((((....-----.......-----..))))))).)))))...)))).).))))).----- ( -18.12, z-score = -1.88, R) >droGri2.scaffold_15110 24341600 86 - 24565398 -------------AUAUUUUU--AUGACCAAUUACCGCUUUAUGCUGCGUUUCAAUUUCCGCGUAGUAAAA----UUUUUUAAAUUCAGCAAAAGGAGAAAAAGA------- -------------........--...................((((((((..........))))))))...----((((((...(((.......))).)))))).------- ( -9.50, z-score = 0.99, R) >droMoj3.scaffold_6680 2338110 94 + 24764193 ---------UUUUUAGUUCGU--UUAACCAAUUACCGCUUUAUGCUGUGUUUCAAUUUCCGCGUGGUACAAACCAAUUUUGAAAUUCAGCAAAAGGAGAGAAAAA------- ---------............--............(.((((.(((((.(((((((........((((....))))...))))))).))))).)))).).......------- ( -18.40, z-score = -1.08, R) >droVir3.scaffold_10322 301591 89 + 456481 --------------GUUUCUC--AUGACCAAUUACCGCUUUAUGCUGCGUUUUAAUUUCCGCGUAGAAGAAACCAAUUUUGAAAUUCAGCAAAAGGAGAGAAAAA------- --------------.((((((--.(((....)))...((((.(((((.(((((((.......................))))))).))))).)))).))))))..------- ( -15.50, z-score = -0.47, R) >droWil1.scaffold_180916 2101331 109 + 2700594 AUUUGAAAUAAACAUUUUCCA--UUAUCCAAUUACCGCUUUAUGCUGCAUUUCAAUAUCCAUGAAAUGAAAUCC-AUGAUGAAAUUCAGCAAAAAAGUAGAGAAAAAAAGAG ....((((.......))))..--...........(..((((.(((((.((((((.....((((..........)-))).)))))).)))))..))))..)............ ( -15.30, z-score = -1.03, R) >droPer1.super_33 512306 99 + 967471 --UUAUCAAUGAUAUUCUGUAUCAGAUCCAAUUACCGCUUUGUGCUGCAUUUCAAUAUCCC--ACAGAAAAA----UUUUGAAAUUCAGCAAAAGGAGAGAAAAAAG----- --...((..((((((...))))))...........(.((((.(((((.(((((((......--.........----..))))))).))))).)))).).))......----- ( -17.33, z-score = -1.27, R) >dp4.chrXR_group6 12493042 102 + 13314419 --UUAUCAAUGAUAUUCUGUAUCAGAUCCAAUUACCGCUUUGUGCUGCAUUUCAAUAUCCC--ACAGAAAAA----UUUUGAAAUUCAGCAAAAGGAGGAGAGAAAAAAG-- --...((..((((((...))))))..........((.((((.(((((.(((((((......--.........----..))))))).))))).)))).)).))........-- ( -20.83, z-score = -1.75, R) >droAna3.scaffold_13337 534338 91 + 23293914 ---UUUCAAUGAUGUUUUCAG--AAGUCCAAUUACCGCUUUGUGCUGCAUUUCAAUAUC-----CACACAAA----UUUUGAAAUUCAGCAAAAGGAGAGAGAAG------- ---((((..(((.....))).--............(.((((.(((((.(((((((....-----........----..))))))).))))).)))).).))))..------- ( -17.04, z-score = -0.76, R) >droEre2.scaffold_4784 2524788 91 + 25762168 --UUUCCAAUGGUAUUUUCAA----AUCCAAUUACCGCUUUGUGCUGCAUUUCAAUAUC-----CACACAA-----UUUUGAAAUUCAGCAAAAGGAGAGAGAAGAG----- --(((((...((((.......----.......))))......(((((.(((((((....-----.......-----..))))))).)))))...)))))........----- ( -19.66, z-score = -2.14, R) >droYak2.chr3L 14768623 91 - 24197627 --UUUCCAAUGAUAUUUUCAA----AUCCAAUUACCGCUUUGUGCUGCAUUUCAAUAUC-----CACACAA-----UUUUGAAAUUCAGCAAAAGGAGAGAGAAGAG----- --(((((..(((.....))).----.................(((((.(((((((....-----.......-----..))))))).)))))...)))))........----- ( -17.52, z-score = -1.79, R) >droSec1.super_2 2533382 91 + 7591821 --UUUUCAAUGAUAUUUUCAA----AUCCAAUUACCGCUUUGUGCUGCAUUUCAAUAUC-----CACACAA-----UUUUGAAAUUCAGCAAAAGGAGAGAGAAGAG----- --(((((..(((.....))).----..........(.((((.(((((.(((((((....-----.......-----..))))))).)))))...)))).).))))).----- ( -18.12, z-score = -1.88, R) >droSim1.chr3L 2065968 91 + 22553184 --UUUUCAAUGAUAUUUUCAA----AUCCAAUUACCGCUUUGUGCUGCAUUUCAAUAUC-----CACACAA-----UUUUGAAAUUCAGCAAAAGGAGAGAGAAGAG----- --(((((..(((.....))).----..........(.((((.(((((.(((((((....-----.......-----..))))))).)))))...)))).).))))).----- ( -18.12, z-score = -1.88, R) >consensus __UUUUCAAUGAUAUUUUCAA____AUCCAAUUACCGCUUUGUGCUGCAUUUCAAUAUC_____CACACAA_____UUUUGAAAUUCAGCAAAAGGAGAGAGAAAAG_____ .....................................((((.(((((.(((((((.......................))))))).))))).))))................ (-12.93 = -12.85 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:54 2011