| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,499,551 – 2,499,676 |
| Length | 125 |
| Max. P | 0.840755 |
| Location | 2,499,551 – 2,499,676 |
|---|---|
| Length | 125 |
| Sequences | 5 |
| Columns | 125 |
| Reading direction | forward |
| Mean pairwise identity | 92.56 |
| Shannon entropy | 0.13245 |
| G+C content | 0.46155 |
| Mean single sequence MFE | -37.54 |
| Consensus MFE | -36.36 |
| Energy contribution | -35.96 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.840755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2499551 125 + 24543557 GUGGAUUUCCCGGAUGAGUCGGGAGACCAGUUCGCAGCAGGCCUUUUGCCUGUUCUUGGCCACAGCCAUAACCUAGAUGGUGAUAAACAUGAAAGUUAGUGGCUUAAUUUAAUCAACUAGUAGGA ..((.((((((((.....))))))))))((((.(.(((((((.....))))))))..((((((.(((((.......)))))....(((......))).))))))..........))))....... ( -37.30, z-score = -1.08, R) >droSim1.chr3L 2053425 125 + 22553184 GUGGAUUUCCCGGAUGAGUCGGGAGACCAGUUCGCAGCAGGCCUUUUGCCUGUUCUUGGCCACAGCCAUAACCUAGAUGGUAAUAAAUUUGAAAGUUAGUGGCUUGAUUUAAUUAACUAGUAGGA .(((.((((((((.....)))))))))))....(.(((((((.....)))))))).((((....))))...((((..((((((((((((...((((.....))))))))).))).)))).)))). ( -36.40, z-score = -1.01, R) >droSec1.super_2 2520913 124 + 7591821 GUGGAUUUCCCGGAUGAGUCGGGAGACCAGUUCGCAGCAAGCCUUUUGCCUGUUCUUGGCCACAGCCAUUACCUAGAUGGUAAUAAACAUGAAAGUUAGUGGCUGGAUUUAAUCAACUAGUAGG- ..((.((((((((.....))))))))))((((.((((((((...)))).))))..(..(((((.((((((.....))))))....(((......))).)))))..)........))))......- ( -35.10, z-score = -0.63, R) >droYak2.chr3L 14755937 125 - 24197627 GUGGAUUUCCCGGAUGAGUCGGGAGACCAGUUCGCAACAUGCCUUCUGCCUGUUCUUGGCCACAGCCAUAACCUAGAUGGUAAUAAACAUGAAUGUUAGUGGCUUGAUUAAAUCAACUAGUGAGA .(((.((((((((.....))))))))))).(((((.(((.((.....)).)))((..((((((.(((((.......)))))....((((....)))).)))))).))............))))). ( -35.90, z-score = -1.14, R) >droEre2.scaffold_4784 2512339 125 + 25762168 GUGGAUCUCCCGGAUAAGUCGGGAGACCAGUUCGCAGCAGGCCUUUUGCCUGUUCUUGGCCACAGCCAUAACCUAGAUGGUGAUAAGCAUUAAAGUUAGUGGCUUGAUUUAAUUCACUAGCAAGA .(((.((((((((.....)))))))))))....(((((((((.....)))))))..((((....))))..(((.....))).....))......(((((((..(((...)))..))))))).... ( -43.00, z-score = -2.48, R) >consensus GUGGAUUUCCCGGAUGAGUCGGGAGACCAGUUCGCAGCAGGCCUUUUGCCUGUUCUUGGCCACAGCCAUAACCUAGAUGGUAAUAAACAUGAAAGUUAGUGGCUUGAUUUAAUCAACUAGUAGGA .(((.((((((((.....)))))))))))....(((((((((.....)))))))...((((((.(((((.......)))))....(((......))).))))))...............)).... (-36.36 = -35.96 + -0.40)
| Location | 2,499,551 – 2,499,676 |
|---|---|
| Length | 125 |
| Sequences | 5 |
| Columns | 125 |
| Reading direction | reverse |
| Mean pairwise identity | 92.56 |
| Shannon entropy | 0.13245 |
| G+C content | 0.46155 |
| Mean single sequence MFE | -34.32 |
| Consensus MFE | -30.43 |
| Energy contribution | -31.19 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2499551 125 - 24543557 UCCUACUAGUUGAUUAAAUUAAGCCACUAACUUUCAUGUUUAUCACCAUCUAGGUUAUGGCUGUGGCCAAGAACAGGCAAAAGGCCUGCUGCGAACUGGUCUCCCGACUCAUCCGGGAAAUCCAC ....(((((((..........(((((.((((((..(((........)))..)))))))))))(..((.......((((.....))))))..).))))))).(((((.......)))))....... ( -35.21, z-score = -1.87, R) >droSim1.chr3L 2053425 125 - 22553184 UCCUACUAGUUAAUUAAAUCAAGCCACUAACUUUCAAAUUUAUUACCAUCUAGGUUAUGGCUGUGGCCAAGAACAGGCAAAAGGCCUGCUGCGAACUGGUCUCCCGACUCAUCCGGGAAAUCCAC ....(((((((..........(((((.((((((..................)))))))))))(..((.......((((.....))))))..).))))))).(((((.......)))))....... ( -32.18, z-score = -1.66, R) >droSec1.super_2 2520913 124 - 7591821 -CCUACUAGUUGAUUAAAUCCAGCCACUAACUUUCAUGUUUAUUACCAUCUAGGUAAUGGCUGUGGCCAAGAACAGGCAAAAGGCUUGCUGCGAACUGGUCUCCCGACUCAUCCGGGAAAUCCAC -.......((.((((.....(((((...(((......))).((((((.....))))))))))).(((((......(((((.....)))))......)))))(((((.......))))))))).)) ( -33.10, z-score = -1.21, R) >droYak2.chr3L 14755937 125 + 24197627 UCUCACUAGUUGAUUUAAUCAAGCCACUAACAUUCAUGUUUAUUACCAUCUAGGUUAUGGCUGUGGCCAAGAACAGGCAGAAGGCAUGUUGCGAACUGGUCUCCCGACUCAUCCGGGAAAUCCAC ....(((((((.......((.(((((.((((....(((........)))....)))))))))...(((.......))).))..((.....)).))))))).(((((.......)))))....... ( -29.20, z-score = 0.14, R) >droEre2.scaffold_4784 2512339 125 - 25762168 UCUUGCUAGUGAAUUAAAUCAAGCCACUAACUUUAAUGCUUAUCACCAUCUAGGUUAUGGCUGUGGCCAAGAACAGGCAAAAGGCCUGCUGCGAACUGGUCUCCCGACUUAUCCGGGAGAUCCAC ((((((((.(((......)))(((((.((((((..(((........)))..))))))))))).))).))))).(((((.....)))))........((((((((((.......))))))).))). ( -41.90, z-score = -3.17, R) >consensus UCCUACUAGUUGAUUAAAUCAAGCCACUAACUUUCAUGUUUAUUACCAUCUAGGUUAUGGCUGUGGCCAAGAACAGGCAAAAGGCCUGCUGCGAACUGGUCUCCCGACUCAUCCGGGAAAUCCAC ....(((((((..........(((((.((((((..(((........)))..)))))))))))(..((.......((((.....))))))..).))))))).(((((.......)))))....... (-30.43 = -31.19 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:50 2011