| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,493,432 – 2,493,524 |
| Length | 92 |
| Max. P | 0.526165 |
| Location | 2,493,432 – 2,493,524 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.03 |
| Shannon entropy | 0.35066 |
| G+C content | 0.40672 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -16.83 |
| Energy contribution | -16.81 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2493432 92 + 24543557 ------CAAAUACAGCGACGCAAAUAAGCACA-----------ACGGCCAAUAAAAUAUUGUAAAUUGGCCUUUAUUGGCUGAGAUUCUGAGGCGUCAUAUCUU-UUGGU ------((((......(((((.....((....-----------.(((((((((((.((........))...))))))))))).....))...)))))......)-))).. ( -21.60, z-score = -1.30, R) >droSim1.chr3L 2046556 93 + 22553184 ------CAAAUACAGCGACGCAAAUAAGCACA-----------ACGGCCAAUAAAAUAUUGUAAAUUGGCCUUUAUUGGCUGAGAUUCUGUGGCGUCAUACCUUUCUGGU ------..........(((((.....((....-----------.(((((((((((.((........))...))))))))))).....))...)))))..(((.....))) ( -22.70, z-score = -1.25, R) >droSec1.super_2 2514520 93 + 7591821 ------CAAAUACAGCGACGCAAAUAAGCACA-----------ACGGCCAAUAAAAUAUUGUAAAUUGGCCUUUAUUGGUCGAGAUUCUGUGGCGUCAUACCUUACUGGU ------..........(((((.....((....-----------.(((((((((((.((........))...))))))))))).....))...)))))..(((.....))) ( -22.20, z-score = -1.27, R) >droYak2.chr3L 14749574 97 - 24197627 -CAGCAUCUAUACAGCGACGCAAAUAAGCACA-----------ACGGCCAAUAAAGUAUUGUAAAUUGGUAUUAAGUGGCUGAAAUGCUGUGGCGUCAUACCUUUUGGG- -..((.........))(((((.....((((..-----------.((((((....(((((((.....)))))))...))))))...))))...)))))...((....)).- ( -27.10, z-score = -1.69, R) >droEre2.scaffold_4784 2505450 97 + 25762168 -CGGCUUCAAUACAGCGACGCAAAUUAGCACA-----------ACGGCCAAUAAAAUAUUGAAAAUUGGCCUUUAUUGGCUGAGAUUCUGUGGCGUCAUACCUUUUGGG- -..(((.......)))(((((....(((....-----------.(((((((((((.((.(....).))...))))))))))).....)))..)))))...((....)).- ( -25.50, z-score = -1.57, R) >droAna3.scaffold_13337 515927 109 + 23293914 CAAAUGUCAAUAAAACGACGCAAAUAGGCAAAUAGAAACACAAGCUGCCAAUAAAGUAUUAUGAAUUGGCAUUUAUUGGCUGAGGUUCCGAGGCGUCAUACUUUUUUGG- ((((.(((((((((.....((......))................(((((((..(......)..))))))))))))))))(((.((......)).)))......)))).- ( -21.20, z-score = -0.26, R) >consensus ______CAAAUACAGCGACGCAAAUAAGCACA___________ACGGCCAAUAAAAUAUUGUAAAUUGGCCUUUAUUGGCUGAGAUUCUGUGGCGUCAUACCUUUUUGG_ ................(((((.......................(((((((((((................))))))))))).(....)...)))))............. (-16.83 = -16.81 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:49 2011