| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,483,940 – 2,484,056 |
| Length | 116 |
| Max. P | 0.759532 |
| Location | 2,483,940 – 2,484,056 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 86.35 |
| Shannon entropy | 0.23854 |
| G+C content | 0.43589 |
| Mean single sequence MFE | -35.46 |
| Consensus MFE | -22.48 |
| Energy contribution | -23.24 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.759532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2483940 116 - 24543557 GUCAGACGUUGACGUUAAAAAACCGCGGGCGGCUAAUGAGACAAGUUGAUUGCUUGGCUCGGGGGAUUAUCCUCUUAGCCAUUCAU---UUUCCUUGUAUCAACUGACAUUUGAAAGCA (((((..((((.(((.........)))..))))...(((.(((((..((.((..(((((.(((((.....))))).)))))..)).---))..))))).))).)))))........... ( -38.40, z-score = -2.98, R) >droEre2.scaffold_4784 2494078 116 - 25762168 GUCAGACAUUGACAUUAAAAAACCGCGGGCGGCUAAUGAGACAAGUUGAUUGCUUGGCUCAUGGGAUUAUCCUCCAAGUCAUAGAU---UCCACUCGAAAUCGUUAUUAUUUCCUAGCA (((((...)))))...........(((((.((((.(((((.(((((.....))))).))))).(((......))).))))...(((---(.(....).))))..........))).)). ( -25.10, z-score = 0.01, R) >droYak2.chr3L 14739884 119 + 24197627 GUCAGACAUUGACGUUAAAAAACCGCGGGCGGUUAAUGAGACAAGUUGAUUGCUUGGCUCAGGGGAUUAUCCUCAAAGUCUUUGAGUUUUUUCUUUGUAUCAACUGUCAUUUUAAACCA ....((((((((..(.(((((((((.((((......((((.(((((.....))))).))))((((.....))))...)))).)).)))))))....)..)))).))))........... ( -31.40, z-score = -1.62, R) >droSec1.super_2 2505042 116 - 7591821 GUCAGACGUUGACGUUAAAAAACCGCGGGCGGCUAAUGAGACAAGUUGAUUGCUUGGCUCGGGGGAUUAUCCUCUUAGUCAUUCAG---UUUCCUUGUACCAACUGACAUUUUAAAGCA (((((..((((.(((.........)))..))))...((..(((((..(((((..(((((.(((((.....))))).)))))..)))---))..)))))..)).)))))........... ( -37.40, z-score = -2.68, R) >droSim1.chr3L 2037110 116 - 22553184 GUCAGACGUUGACGUUAAAAAGCCGCGGGCGGCUAAUGAGACAAGUUGAUUGCUUGGCUCGGGGGAUUAUCCUCUUAGCCAUUCAG---UUUCCUUGUACCAACUGACAUUUUAAAGCA ((((((((....))).....(((((....)))))..((..(((((..(((((..(((((.(((((.....))))).)))))..)))---))..)))))..)).)))))........... ( -45.00, z-score = -4.47, R) >consensus GUCAGACGUUGACGUUAAAAAACCGCGGGCGGCUAAUGAGACAAGUUGAUUGCUUGGCUCGGGGGAUUAUCCUCUUAGUCAUUCAG___UUUCCUUGUACCAACUGACAUUUUAAAGCA (((((.......(((((.....(((....))).)))))..(((((..((.....(((((.(((((.....))))).)))))........))..))))).....)))))........... (-22.48 = -23.24 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:48 2011