| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,475,465 – 2,475,578 |
| Length | 113 |
| Max. P | 0.860083 |
| Location | 2,475,465 – 2,475,578 |
|---|---|
| Length | 113 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 61.32 |
| Shannon entropy | 0.83795 |
| G+C content | 0.62227 |
| Mean single sequence MFE | -45.10 |
| Consensus MFE | -12.79 |
| Energy contribution | -12.67 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860083 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2475465 113 + 24543557 GCCAUCCUGGGUGGGCAGACCCACGUAUGGAGGCAAUGGUCGGCUGAUACCCUCCGCAG--GAGACAAAACC-AAUAAACCGAUCAUGGCCAGCGAGGCCAGGAUUUUCACGGACG (((.(((((.(((((....))))).)).))))))....(((.(.(((....((((...)--)))........-........((((.(((((.....))))).)))).)))).))). ( -40.50, z-score = -1.31, R) >droSim1.chr3L 2028643 113 + 22553184 GCCAUCCUGGGUGGGCAGACCCACGUAUGGAGGCAAUGGUCGGCUGAUACCCUCCGCAG--GAGACAAAACC-AAUAAACCGAUCACGGCCAGCGAGGCCAGCACUUUCACGGACG (((.(((((.(((((....))))).)).))))))..(((((.((((.....((((...)--)))........-......(((....))).))))..)))))............... ( -38.30, z-score = -0.90, R) >droSec1.super_2 2496949 113 + 7591821 GCCAUCCUGGGUGGGCAGACCCACGUAUGGAGGCAAUGGUCGGCUGAUACCCUCCGCAG--GAGACAAAACC-AAUAAACCGAUCACGGCCAGCGAGGCCAGCACUUUCACGGAUG ..(((((((.(((((....))))).))((((((...(((((.((((.....((((...)--)))........-......(((....))).))))..)))))...)))))).))))) ( -39.60, z-score = -1.14, R) >droYak2.chr3L 14731200 113 - 24197627 CCCAUCCUGGGUGGGCAGACCCACGUAGGGUGGCAAUGGUCUGCUGAUUGCCUCCGCAG--GAGACACAACC-AAUAAACCGAUCAUGGCCAGCGAGGCCAGCACUUGCACGGACG .((((((((.(((((....))))).))))))))...((((((.(((..........)))--.)))).))...-......(((....(((((.....)))))((....)).)))... ( -46.10, z-score = -1.92, R) >droEre2.scaffold_4784 2482501 113 + 25762168 GCCAUCCUGGGUGGGCAGACCCACGUAAGGGGGCAGUGGUCUGCUGACUCCCUCCGCAG--GAGACAGUACC-AAUAAACCGAUCACGGCCAGCGAGGCCAGAAUUUUCACGGACG (((.(((((.(((((....))))).).)))))))..((((..((((.((((.......)--))).)))))))-).....(((.....((((.....)))).((....)).)))... ( -42.50, z-score = -1.15, R) >droAna3.scaffold_13337 501505 116 + 23293914 GCUGUCCUGGCUGGGCAGGCCCACGUAGGGGGGCAGCGGCCGGCUGAUGGCCUCCCCGGACGGGGCAAGGCCCAGCAGGGCGAUCGCGAGGAAGGCCACAGACGUUUUCGCGGCGG (((((((((.((((((..((((.(((.(((((((..(((....)))...))).))))..)))))))...)))))))))))))..((((((((.(........).)))))))))).. ( -68.00, z-score = -2.78, R) >dp4.chrXR_group6 12440223 112 + 13314419 GCCGUCCUGCGUGGGCAGGCCCACGUACGGCGGCAGGGGCCGGCUGAUGGCCUCCGCGGCAGGAGCCACAGUCAGGAGGGCGGCUGCA--CAGAGCAGC-AGCAUCCGCAGGGAG- ((((((.((((((((....)))))))).)))))).....(((((((.((((.(((......)))))))))))).(((..((.(((((.--....)))))-.)).)))...))...- ( -63.90, z-score = -2.92, R) >droPer1.super_33 461869 112 + 967471 GCCGUCCUGCGUGGGCAGACCCACGUACGGCGGCAGGGGCCGGCUGAUGGCCUCCGCGGCAGGAGCCACAGUCAGGAGGGCGGCUGCA--CAGAGCAGC-AGCAUCCGCAGGGAG- ((((((.((((((((....)))))))).)))))).....(((((((.((((.(((......)))))))))))).(((..((.(((((.--....)))))-.)).)))...))...- ( -62.60, z-score = -3.03, R) >droWil1.scaffold_180916 2049303 95 + 2700594 ACCAUCCUGGGUGGGUAAUCCCACAUACGGGGGAAAUGGACGACUUAUGCCCUCGGCAA---AGGCUAAUACUGCCAGCGAUGAUAGAAUUAGAAUUA------------------ ..(((((((((((((....)))))...((((((....((....))....))))))....---............)))).))))...............------------------ ( -30.20, z-score = -1.65, R) >droVir3.scaffold_10322 251439 95 + 456481 ACCAUCCUGGGUCGGCAGUCCCACAUAGGGCGGUAGUGGCCUGACCACGCCCUCUGCAG---AGGCGGCCAGAAUCAGGGCCAGGAAUAGCAUCAAGU------------------ ....((((((.((....((((......))))(((..(((((.(....)(((.((....)---)))))))))..))).)).))))))............------------------ ( -32.90, z-score = 0.49, R) >droMoj3.scaffold_6680 2301378 95 + 24764193 ACCAUCCUGGGUGGGCAUGCCCACAUAGGGAGGCAAUGGCUUCAUCAAUGCCUCGGUAG---AGGCGACCAUCAUUGCGGCCAGGAUUAUCAGAGGCU------------------ ...((((((((((((....)))))...(((((((....))))).....((((((....)---))))).))..........)))))))...........------------------ ( -38.70, z-score = -1.75, R) >droGri2.scaffold_15110 24307197 95 - 24565398 GCCAUCCUGGGUGGGCAGACCCACAUGGGGUGGCAGUGGUUGGAUGACACCCUCUGCCA---AGGCAAUCAGCACCACUGCGAGCAAUACCACAAAAU------------------ ((((((((..(((((....)))))..)))))))).(((((.((......))((((((..---..)))....(((....))))))....))))).....------------------ ( -37.90, z-score = -1.32, R) >consensus GCCAUCCUGGGUGGGCAGACCCACGUAGGGAGGCAAUGGUCGGCUGAUGCCCUCCGCAG__GAGGCAAAACC_AAUAAAGCGAUCACGACCAGCGAGGC_AGCAUUUUCACGGA__ (((.((.((.(((((....))))).)).)).)))....(((......................))).................................................. (-12.79 = -12.67 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:47 2011