| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,472,865 – 2,472,961 |
| Length | 96 |
| Max. P | 0.917404 |
| Location | 2,472,865 – 2,472,961 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.82 |
| Shannon entropy | 0.32576 |
| G+C content | 0.44219 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -21.11 |
| Energy contribution | -21.68 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2472865 96 - 24543557 UGCGAUGGCGGCAUCGUUGUCGCCAAAAACAAAAGCC----AAACAUGUGGCAG-----------GGUGUCGCAUCAAUUAGAUCCUGUAUGAACUAUAGCCUCUUACUCA (((((((((((((....)))))))..........(((----(......))))..-----------...))))))......(((..(((((.....)))))..)))...... ( -28.80, z-score = -1.88, R) >droEre2.scaffold_4784 2479907 99 - 25762168 UGCGAUGGCGGCAUCGUUGUCGCCAAAAACAAAAGCCAAGAAAAUAUGUGGCACUCAGUAAAUGAGGUAUCGAAUCACUUGCAUCCUGUAUGGAAUUUA------------ (((((((((((((....))))))))...((....((((..........)))).((((.....))))))..........)))))(((.....))).....------------ ( -28.20, z-score = -2.04, R) >droSec1.super_2 2494378 111 - 7591821 UGCGAUGGCGGCAUCGUUGUCGCCAAAAACAAAAGCCACGAAAACAUGUGGCAGCCAGUAAAUGAGGUGUCGAAUCAAUUAGAUCCUGUAUGAACUAUAGGGAGUUAAUCA ..(((((((((((....)))))))..........((((((......)))))).(((.........))))))).....(((((.(((((((.....)))))))..))))).. ( -31.40, z-score = -1.88, R) >droSim1.chr3L 2026067 99 - 22553184 UGCGAUGGCGGCAUCGUUGUCGCCAAAAACAAAAGCCACGAAAACAUGUGGCAGUCAGUAAAUGAGGUGUCGAAUCAAUUAGAUCCUGUAUGAACUAUA------------ ...((((((((((....)))))))..........((((((......)))))).)))(((..((((((.(((..........)))))).)))..)))...------------ ( -28.10, z-score = -2.09, R) >consensus UGCGAUGGCGGCAUCGUUGUCGCCAAAAACAAAAGCCACGAAAACAUGUGGCAGUCAGUAAAUGAGGUGUCGAAUCAAUUAGAUCCUGUAUGAACUAUA____________ ..(((((((((((....)))))))..........(((((........)))))................))))....................................... (-21.11 = -21.68 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:46 2011