| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,471,789 – 2,471,844 |
| Length | 55 |
| Max. P | 0.530565 |
| Location | 2,471,789 – 2,471,844 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 93.82 |
| Shannon entropy | 0.10546 |
| G+C content | 0.52202 |
| Mean single sequence MFE | -16.20 |
| Consensus MFE | -14.04 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2471789 55 + 24543557 CGGUGCUUAGGCUUCUACGCUGAAAAGCGAGACAGCUGGCAUUCGCAGACGAACU ..(((((..(((((((.((((....))))))).)))))))))(((....)))... ( -19.00, z-score = -1.87, R) >droSim1.chr3L 2025022 55 + 22553184 CGGUGCUUAGGCUUCUACGCUGAAAAGCGAGACAGCUGACAUUCGCAGACGAACU ((.(((...(((((((.((((....))))))).)))).......)))..)).... ( -16.30, z-score = -1.44, R) >droSec1.super_2 2493356 54 + 7591821 CGGUGCUUAGGCUUCUACGCUGAAAAGCGAGACAGCUGGCAUUCGCAGACGACU- (((((((..(((((((.((((....))))))).)))))))).))).........- ( -18.70, z-score = -1.74, R) >droYak2.chr3L 14727523 55 - 24197627 CGGUGCUUAGGCUUCUACGCUAAAAAGCGAGACAGCUGACAUUCACAGAGGAACU ..(((....(((((((.((((....))))))).))))......)))......... ( -13.50, z-score = -1.09, R) >droEre2.scaffold_4784 2478885 55 + 25762168 CGGUGCUUAGGCUUCUACGCUAAAAAGCGAGACAGCUGACAUUCACAGACGAACU ..(((....(((((((.((((....))))))).))))......)))......... ( -13.50, z-score = -1.35, R) >consensus CGGUGCUUAGGCUUCUACGCUGAAAAGCGAGACAGCUGACAUUCGCAGACGAACU ..(((....(((((((.((((....))))))).))))......)))......... (-14.04 = -14.70 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:45 2011