| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,469,934 – 2,470,024 |
| Length | 90 |
| Max. P | 0.762208 |
| Location | 2,469,934 – 2,470,024 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 96.00 |
| Shannon entropy | 0.06971 |
| G+C content | 0.47556 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -24.40 |
| Energy contribution | -24.28 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2469934 90 + 24543557 GCUCUGCUUCCUCAAUUUGUCUGGGCAAGUGCUUUCGGGGCAAAUUGGCCUGCGGCGUUGAUGGUCCAACUAUCGUUUAAUUGGACUUAC ((.((((....(((((((((((((((....))))...)))))))))))...)))).))....(((((((.((.....)).)))))))... ( -27.80, z-score = -1.73, R) >droSim1.chr3L 2023165 90 + 22553184 GCUCCGCUUCCUCAAUUUGUCUGGCCAAGUGCUUUUGGGGCAAAUUGGCCUGUGGCGUUGAUUGUCCAACUAUCGUUUAAUUGGAUUUAC ((.((((....((((((((((...(((((....)))))))))))))))...)))).)).....((((((.((.....)).)))))).... ( -24.30, z-score = -1.03, R) >droSec1.super_2 2491532 90 + 7591821 GCUCCGCUUCCUCAAUUUGUCUGGGCAAGUGCUUUUGGGGCAAAUUGGCCUGUGGCGUUGAUUGUCCAACUAUCGUUUAAUUGGACUUAC ((.((((....(((((((((((((((....))))...)))))))))))...)))).)).....((((((.((.....)).)))))).... ( -27.40, z-score = -1.89, R) >droYak2.chr3L 14725572 90 - 24197627 GCUCCGCUUCCUCAAUUUGUCUGAGCAAGUGCUUUUGGGGCAAAUUGGCCUGUGGCGUUGAUUGACCAACUAUCGUUUAAUUGGACUUAC ((.((((....(((((((((((((((....))))...)))))))))))...)))).)).......((((.((.....)).))))...... ( -24.00, z-score = -1.01, R) >droEre2.scaffold_4784 2476969 90 + 25762168 GCUCCGCUUCCUCAAUUUGUCUGAGCAAGUGCUUUUGGGGCAAAUUGGCCUGUGGCGUUGAUUGACCAACUAUCGUUUAAUUGGACUUAC ((.((((....(((((((((((((((....))))...)))))))))))...)))).)).......((((.((.....)).))))...... ( -24.00, z-score = -1.01, R) >consensus GCUCCGCUUCCUCAAUUUGUCUGGGCAAGUGCUUUUGGGGCAAAUUGGCCUGUGGCGUUGAUUGUCCAACUAUCGUUUAAUUGGACUUAC ((.((((....(((((((((((((((....))))...)))))))))))...)))).)).....((((((.((.....)).)))))).... (-24.40 = -24.28 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:44 2011