| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,469,254 – 2,469,316 |
| Length | 62 |
| Max. P | 0.724576 |
| Location | 2,469,254 – 2,469,316 |
|---|---|
| Length | 62 |
| Sequences | 4 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 92.20 |
| Shannon entropy | 0.12385 |
| G+C content | 0.54032 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -17.89 |
| Energy contribution | -17.38 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2469254 62 - 24543557 ACGGCGGUGGCGGCAUUUUUCAAUUAAUGCCAGUCGAUCCAAGCCGCCAUAUGCACUCAAGC ..(((((((((((((((........)))))).))).......)))))).............. ( -20.41, z-score = -1.97, R) >droEre2.scaffold_4784 2476300 62 - 25762168 ACGGCGGUGGCGGCGUUUUUCAAUUAAUGCCAGCCGAUCCGAGCUGCCAUAUGCACUCAGAC ..((...((((((((((........)))))).))))..))(((.(((.....)))))).... ( -21.30, z-score = -1.48, R) >droSec1.super_2 2490863 62 - 7591821 ACGGCGGUGGCGGCAUUUUUCAAUUAAUGCCAGUCGAUCGAAGUCGCCAUAUGCACUCAGGC ...((((((((((((((........))))))....(((....)))))))).)))........ ( -19.20, z-score = -1.43, R) >droSim1.chr3L 2022483 62 - 22553184 ACGGCGGUGGCGGCAUUUUUCAAUUAAAGCCAGUCGAUCGAAGUCGCCAUAUGCACUCAGGC ...(((((((((((.((..((.(((......))).))..)).)))))))).)))........ ( -16.50, z-score = -0.69, R) >consensus ACGGCGGUGGCGGCAUUUUUCAAUUAAUGCCAGUCGAUCCAAGCCGCCAUAUGCACUCAGGC ..(((((((((((((((........)))))).)))).......))))).............. (-17.89 = -17.38 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:43 2011