| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,459,570 – 2,459,664 |
| Length | 94 |
| Max. P | 0.508136 |
| Location | 2,459,570 – 2,459,664 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 76.92 |
| Shannon entropy | 0.43427 |
| G+C content | 0.53420 |
| Mean single sequence MFE | -29.83 |
| Consensus MFE | -19.55 |
| Energy contribution | -18.72 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2459570 94 - 24543557 -----------------GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGAUGUA------GCCGAGAUGUCGAAGGGCGCGGAGUUGGCUUUGAAGCUGUAAUAGAAGAAUAUAUG-- -----------------......(((.(.....).)))((((.(((((((((...------.(((....(((....))).))).))))))))).))))...................-- ( -29.90, z-score = -1.55, R) >droSim1.chr3L 2012812 93 - 22553184 -----------------GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGAUGUG------GCCGAGAUGUCGAAGGGCGCGGAGUUGGCUUUGAAGCUGUAAUAGAAGAAUAUAU--- -----------------......(((.(.....).)))((((.(((((((((...------.(((....(((....))).))).))))))))).))))..................--- ( -29.90, z-score = -1.44, R) >droSec1.super_2 2481232 92 - 7591821 -----------------GGAUGUCCAGCGGCUUGGUGGGUUUGAAGGCCGAUGUG------GCCGAGAUGUCGAAGGGCGCGGAGUUGGCUUUGAAGCUGCAAUAGAAGAAUAUA---- -----------------((....)).(((((((.(.........((((((((...------.(((....(((....))).))).))))))))).)))))))..............---- ( -29.00, z-score = -1.04, R) >droYak2.chr3L 14715021 92 + 24197627 -----------------GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGAGCUG------GCCGAGAUGUCGAAGGGCGCGGAGUUGGCUUUGAAGCUGCAAGAGAAGAAUACA---- -----------------((....)).((((((((((.((((((.....)))))).------))).....(((....))).(((((....))))))))))))..............---- ( -33.80, z-score = -1.29, R) >droEre2.scaffold_4784 2466347 92 - 25762168 -----------------GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGAUGUG------GCCGAGAUGUCGAAGGGCGCGGAGUUGGCUUUGAAGCUGCAAUAGAACAAUAUA---- -----------------((....)).((((((((((.(((((...((((.....)------)))..(.((((....))))).))))).)))...)))))))..............---- ( -31.80, z-score = -1.28, R) >droAna3.scaffold_13337 488224 92 - 23293914 -----------------GGAUGUCCAGUGGCUUCGUGGGCUUGAAGGCGGACGUG------GCCGAGAUGUCAAAGGGCGCGGAGUUGGCUUUAAAGCUGUAGAGAAAGAGUAGA---- -----------------.((((((...(((((.(((..(((....)))..))).)------)))).))))))..(.(((..((((....))))...))).)..............---- ( -24.80, z-score = 0.38, R) >droWil1.scaffold_180916 2024616 90 - 2700594 -----------------GUAUGUCCAGCGGCUUGGUGGGCUUAAAGGCCGAUGAG------GCCGAGAUGUCAAAGGGUGUGGAGUUGGCUUUGAAGCUGUAGAAAUAUAAAC------ -----------------((((.(((((((((((.((.((((....)))).)).))------)))......((((((.............)))))).))))..)).))))....------ ( -28.32, z-score = -2.22, R) >droVir3.scaffold_10322 234186 113 - 456481 AAGGUGCGCUCCGACGCGAAUGUCCAGCGGCUUGGUAGGCUUAAAGGCCGACGUU------GCCGAAAUGUCAAAUGGCGCGGAGUUCGCUUUAAAGCUGCAGACAAAUUGAAUAAGUU ((((((.((((((.(((.(.....((.((((...((.((((....)))).))...------))))...)).....).))))))))).))))))..((((.(((.....)))....)))) ( -36.20, z-score = -0.24, R) >droMoj3.scaffold_6680 2282289 92 - 24764193 ---------------AUGGAUUUCCAAUGGUUUCGUGGGCUUGAAGGCCGAUGUC------GCCGAGAUAUCGAAUGGCGUGGAGUUUGCUUUAAAGCUACAAUGCAAAAAGA------ ---------------.(((....))).((((..(((.((((....)))).)))..------)))).....((.....((((..(((((......)))))...)))).....))------ ( -25.50, z-score = -0.69, R) >droGri2.scaffold_15110 24291422 96 + 24565398 -----------------GAAUGUCCAGCGGUAUGGUGGGCUUGAAAGCCGAUGUU------GCCGAGAUGUCAAAUGGCGUGGAGUUUGCUUUAAAGCUGCAGGCGGGUUAAAUGUGUA -----------------.....(((..(((((..((.((((....)))).))..)------))))............((.((.(((((......))))).)).)))))........... ( -28.20, z-score = -0.56, R) >dp4.chrXR_group6 12421088 91 - 13314419 -----------------GAAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGACGUGCCCGACGACGAGAUGUCAAAGGACGUGGAGUUGGCUUUAAAGCUGCAAAAGAG----------- -----------------.........(((((((.((.((((....)))).))..(((.(((..(...(((((....))))))..))))))....))))))).......----------- ( -30.00, z-score = -1.07, R) >droPer1.super_33 442248 91 - 967471 -----------------GAAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGACGUGCCCGACGACGAGAUGUCAAAGGACGUGGAGCUGGCUUUGAAGCUGCAAAAUAG----------- -----------------..((((((.(.(((...((.((((....)))).))..))))((((......))))...))))))(.((((........)))).).......----------- ( -30.50, z-score = -1.00, R) >consensus _________________GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGAUGUG______GCCGAGAUGUCAAAGGGCGCGGAGUUGGCUUUGAAGCUGCAAAAGAAGAAUAUA____ ..........................(((((((.((.((((....)))).))................((((....))))(((((....)))))))))))).................. (-19.55 = -18.72 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:43 2011