| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,446,392 – 2,446,494 |
| Length | 102 |
| Max. P | 0.943391 |
| Location | 2,446,392 – 2,446,494 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 93.87 |
| Shannon entropy | 0.11488 |
| G+C content | 0.41674 |
| Mean single sequence MFE | -29.41 |
| Consensus MFE | -25.13 |
| Energy contribution | -25.52 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2446392 102 - 24543557 AUGGUAUAAAUAUUUAUAGGCUCGGCCAAGUGCCAGCCAGAAAUGUGCUCGGCGGACCAAAAAUAGCAAUGAAUGCGAGUAUAUAGACAAAUAUUGUACCAC------- .((((((((.(((((...((((.(((.....)))))))....((((((((((....)).......(((.....)))))))))))....))))))))))))).------- ( -33.10, z-score = -3.93, R) >droSim1.chr3L 2008882 102 - 22553184 AUGGUAUAAAUAUUUAUAGGCUCGGCCAAGUGCCAGCCAGAAAUGUGCUCGGCGGACCAAAAAUAGCAAUGAAUGCGAGUAUAUAGACAAAUAUUGCUCCAC------- .(((....(((((((...((((.(((.....)))))))....((((((((((....)).......(((.....)))))))))))....)))))))...))).------- ( -29.40, z-score = -2.34, R) >droSec1.super_2 2477257 102 - 7591821 AUGGUAUAAAUAUUUAUAGGCUCGGCCAAGUGCCAGCCAGAAAUGUGCUCGGCGGACCAAAAAUAGCAAUGAAUGCGAGUAUAUAGACAAAUAUUGCUCCAC------- .(((....(((((((...((((.(((.....)))))))....((((((((((....)).......(((.....)))))))))))....)))))))...))).------- ( -29.40, z-score = -2.34, R) >droYak2.chr3L 14709589 102 + 24197627 AUGGUAUAAAUAUUUAUAGGCUCGGCCAAGUGCCAGCCAGAAAUGUGCUCGCCGGACCAAAAAUAGCAAUGAAUGCGAGUAUAUAGACAAAUAUUGUUCCAC------- .(((....(((((((...((((.(((.....)))))))....((((((((((......................))))))))))....)))))))...))).------- ( -28.35, z-score = -2.59, R) >droEre2.scaffold_4784 2462296 102 - 25762168 AUGGUAUAAAUAUUUAUAGGCUCGGCCAAGUGCCAGCCAGAAAUGUGCUCGGCGGACCAAAAAUAGCAAUGAAUGCGAGUAUAUAGACAAAUAUUGCUCCAU------- ((((....(((((((...((((.(((.....)))))))....((((((((((....)).......(((.....)))))))))))....)))))))...))))------- ( -29.70, z-score = -2.30, R) >droAna3.scaffold_13337 484802 109 - 23293914 AUGUUAUAAAUAUUUAUAGGCUCGGCCAAGUUCCAGCCAGAAAUGUGCUCGUCGGACCAAAAAUAGCAAUGAAUGCGAGUGUAUAGAAAAAUAUUUCUCCGGCCGGAGC ............((((((.((((((((.....(.(((((....)).))).)..)).)).......(((.....))))))).)))))).........((((....)))). ( -26.50, z-score = -1.10, R) >consensus AUGGUAUAAAUAUUUAUAGGCUCGGCCAAGUGCCAGCCAGAAAUGUGCUCGGCGGACCAAAAAUAGCAAUGAAUGCGAGUAUAUAGACAAAUAUUGCUCCAC_______ .(((....(((((((...((((.(((.....)))))))....((((((((((....)).......(((.....)))))))))))....)))))))...)))........ (-25.13 = -25.52 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:40 2011