| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,397,458 – 2,397,563 |
| Length | 105 |
| Max. P | 0.563513 |
| Location | 2,397,458 – 2,397,563 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.88 |
| Shannon entropy | 0.37117 |
| G+C content | 0.39821 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -15.40 |
| Energy contribution | -16.72 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2397458 105 - 24543557 -GGAUUUCGUUUU-GGAUGAAUGAAAUGUUAAUCGGAGCAACAGGUUCACCUGAGAUGGCUCAAUCUGAGCUUAUGUCUCCGAUUUGAAACUCUGAAUGAAGAAAUU -..(((((((((.-....)))))))))(((((((((((((.((((....))))....(((((.....)))))..)).))))))))...)))(((......))).... ( -30.80, z-score = -2.51, R) >droEre2.scaffold_4784 2413039 105 - 25762168 -GGAUUUAGUUUU-GAAUGAAUGAAAUGUUAAUCGGAGCAACAGGUUCACUGGAGAUGGCUCAAUCCGAGCUCAUAUCUAAGAUUUGGGACUUUGAAUGAAGUCAAU -.......(((((-((.(((........))).)))))))..((((((...((((.(((((((.....)))).))).)))).)))))).((((((....))))))... ( -25.50, z-score = -0.97, R) >droYak2.chr3L 14658993 105 + 24197627 -GGCUUUCGUUUU-GGAUGAAUGAAAUCUUAAUCGGAGCAACAGGUUCACUGGAGAUGGCUCAAUUCGAGCUUAUAUCCAAGAUCUGUGUUUCUGAAUGAAGUCAAU -(((((((((((.-....)))))))...(((.((((((..(((((((...((((...(((((.....)))))....)))).)))))))..)))))).)))))))... ( -32.50, z-score = -2.52, R) >droSec1.super_2 2421966 105 - 7591821 -GGAUUUCGUUUU-GGAUGAAUGAAAUGUUAAUCGGAGCAACAGGUUCACUGGAGAUGCCUCAAUCCGAGCUUAUGUCUCAGAUAUGGGACUAUAAAUGAAGAAAUU -..(((((((((.-....))))))))).....(((((....(((.....)))(((....)))..)))))..((((((((((....)))))).))))........... ( -25.90, z-score = -1.07, R) >droSim1.chr3L 1959594 105 - 22553184 -GGAUUUCGUUUU-GGAUGAAUGAAAUGUUAAUCGGAGCAACAGGUUCACUGGAGAUGGCUCAAUCCGAGCUUAUAUCUCAGAUUUGGAACUCUGAAUGAAGAAAUU -..(((((((((.-....))))))))).(((.((((((...((((((.....((((((((((.....)))))...))))).))))))...)))))).)))....... ( -28.70, z-score = -1.70, R) >droAna3.scaffold_13337 442165 103 - 23293914 GGGAUUUCAUUUUCGGAUGAAUGAAAUCUCAAUCGGGCCAACAGGUUCACUAAUGAUGGCUCAAUC--AACUGGCUGACAACGUUU--UACUGCGACAGACUCUAAG ((((((((((((......))))))))))))....((((((.((..........)).))))))....--....(((((....(((..--....))).))).))..... ( -26.50, z-score = -2.16, R) >consensus _GGAUUUCGUUUU_GGAUGAAUGAAAUGUUAAUCGGAGCAACAGGUUCACUGGAGAUGGCUCAAUCCGAGCUUAUAUCUAAGAUUUGGGACUCUGAAUGAAGAAAAU ...(((((((((......))))))))).(((.((((((...((((((....(((...(((((.....)))))....)))..))))))...)))))).)))....... (-15.40 = -16.72 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:36 2011