| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,162,781 – 4,162,879 |
| Length | 98 |
| Max. P | 0.808747 |
| Location | 4,162,781 – 4,162,879 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 93.33 |
| Shannon entropy | 0.13258 |
| G+C content | 0.34281 |
| Mean single sequence MFE | -22.15 |
| Consensus MFE | -20.00 |
| Energy contribution | -19.78 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4162781 98 - 23011544 -----UACGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA--CCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUG-AGCUUAACUAC------------ -----......(-(((((((......(((((((..........))))))).--..((((....)))).........))))))))(((.(((((..-..))))).)))------------ ( -21.30, z-score = -1.54, R) >droSim1.chr2L 4118400 98 - 22036055 -----UACGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA--CCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUG-AGCUUAACUAC------------ -----......(-(((((((......(((((((..........))))))).--..((((....)))).........))))))))(((.(((((..-..))))).)))------------ ( -21.30, z-score = -1.54, R) >droSec1.super_5 2262644 98 - 5866729 -----UACGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA--CCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUG-AGCUUAACUAC------------ -----......(-(((((((......(((((((..........))))))).--..((((....)))).........))))))))(((.(((((..-..))))).)))------------ ( -21.30, z-score = -1.54, R) >droYak2.chr2L 4189461 98 - 22324452 -----UACGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA--CCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUG-AGCUUAACUAC------------ -----......(-(((((((......(((((((..........))))))).--..((((....)))).........))))))))(((.(((((..-..))))).)))------------ ( -21.30, z-score = -1.54, R) >droEre2.scaffold_4929 4230279 98 - 26641161 -----UACGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA--CCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUG-AGCUUAACUAC------------ -----......(-(((((((......(((((((..........))))))).--..((((....)))).........))))))))(((.(((((..-..))))).)))------------ ( -21.30, z-score = -1.54, R) >droAna3.scaffold_12943 734925 98 + 5039921 -----UACGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA--CCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUG-AGCUUAACUAC------------ -----......(-(((((((......(((((((..........))))))).--..((((....)))).........))))))))(((.(((((..-..))))).)))------------ ( -21.30, z-score = -1.54, R) >droPer1.super_1 7061283 99 + 10282868 -----UACGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA--CCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUGAAGCUUAACUAC------------ -----......(-(((((((......(((((((..........))))))).--..((((....)))).........))))))))(((.(((((.....))))).)))------------ ( -21.30, z-score = -1.51, R) >dp4.chr4_group3 9941334 99 + 11692001 -----UACGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA--CCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUGAAGCUUAACUAC------------ -----......(-(((((((......(((((((..........))))))).--..((((....)))).........))))))))(((.(((((.....))))).)))------------ ( -21.30, z-score = -1.51, R) >droWil1.scaffold_180703 1761090 101 + 3946847 -----CACGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACACCCCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUGAAGCUUAACUAC------------ -----......(-(((((((......(((((((..........))))))).....((((....)))).........))))))))(((.(((((.....))))).)))------------ ( -21.30, z-score = -1.40, R) >droVir3.scaffold_12963 11175731 104 + 20206255 CUCCAUUCGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA-ACCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUG-CGCUUAACUAC------------ ........((.(-(((((((......(((((((..........))))))).-...((((....)))).........))))))))((((....)))-)))........------------ ( -21.90, z-score = -1.91, R) >droMoj3.scaffold_6500 2290468 105 - 32352404 CUCCAUACGCAAUUUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA-UACCAAGGUUGCUUGUUUAUUCUAGCAAAAGUGUAUUUAGGUG-CGCUUAGCUAU------------ ........((((....))))...(((((..((((........(((((....-))))))))).))))).......((((..((((((((....)))-))))).)))).------------ ( -25.60, z-score = -2.19, R) >droGri2.scaffold_15252 12761670 116 - 17193109 CUCCAUACGCAA-UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA-UUCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUG-CGCUUAACUACUACGUGAGAGUG (((..((((..(-(((((((......(((((((..........))))))).-...((((....)))).........))))))))(((.(((((..-..))))).)))..)))).))).. ( -26.60, z-score = -1.76, R) >consensus _____UACGCAA_UUUUUGCACUCAAGUUUACCUACUUUUUAUGGUAAACA__CCCAAGGUUGCUUGUUUAUUCUAGCAAAAAUGUAUUUAGGUG_AGCUUAACUAC____________ .............(((((((......(((((((..........))))))).....((((....)))).........))))))).(((.(((((.....))))).)))............ (-20.00 = -19.78 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:34 2011