| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,378,641 – 2,378,695 |
| Length | 54 |
| Max. P | 0.865678 |
| Location | 2,378,641 – 2,378,695 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 97.41 |
| Shannon entropy | 0.04472 |
| G+C content | 0.42593 |
| Mean single sequence MFE | -13.94 |
| Consensus MFE | -13.94 |
| Energy contribution | -13.54 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.32 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2378641 54 + 24543557 CUUCAUUAUGCUUUGGCUCUUUGAGUGGUUUUCCGGCAUGGGCUAAAAUAGCAU .......((((((((((((..((..(((....))).)).)))))))...))))) ( -14.30, z-score = -1.40, R) >droSim1.chr3L 1940755 54 + 22553184 UUUCAUUAUGCUUUGGCUCUUUGAGUGGUUUUCCGGCAUGGGCUAAAAUAGCAU .......((((((((((((..((..(((....))).)).)))))))...))))) ( -14.30, z-score = -1.50, R) >droSec1.super_2 2403244 54 + 7591821 CUUCAUUAUGCUUUGGCUCUUUGAGUGGUUUUCCGGCAUGGGCUAAAAUAGCAU .......((((((((((((..((..(((....))).)).)))))))...))))) ( -14.30, z-score = -1.40, R) >droYak2.chr3L 14639782 54 - 24197627 CUUCAUUAUGCUUUGGCUCUUUGAGUGGUUUUCCGGCGUGGGCUAAAAUAGCAU .......((((((((((((..((..(((....))).)).)))))))...))))) ( -13.60, z-score = -1.06, R) >droEre2.scaffold_4784 2393839 54 + 25762168 CUUCAUUAUGCUUUGGCUCUUUGAGUGGUUUUCCGGUGUGGGCUAAAAUAGCAU .......((((((((((((....(.(((....))).)..)))))))...))))) ( -13.20, z-score = -1.25, R) >consensus CUUCAUUAUGCUUUGGCUCUUUGAGUGGUUUUCCGGCAUGGGCUAAAAUAGCAU .......((((((((((((..((..(((....))).)).)))))))...))))) (-13.94 = -13.54 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:33 2011