| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,373,659 – 2,373,709 |
| Length | 50 |
| Max. P | 0.837502 |
| Location | 2,373,659 – 2,373,709 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 62.81 |
| Shannon entropy | 0.64709 |
| G+C content | 0.44228 |
| Mean single sequence MFE | -9.10 |
| Consensus MFE | -6.36 |
| Energy contribution | -6.33 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.31 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2373659 50 + 24543557 ------------UUCCUCUCAAAGAACUGUUACCUA-CACCCGUGUAAAAGCACGUGGGUUGU ------------........................-..(((((((....))))).))..... ( -8.70, z-score = -0.17, R) >droEre2.scaffold_4784 2388742 52 + 25762168 --------CCUUUUUAUAACCGAUAUUU--UAACUA-CACCCGUGUCAAAACACGUGGGUUGU --------....................--..((.(-(.(((((((....))))).)))).)) ( -8.90, z-score = -0.53, R) >droYak2.chr3L 14634688 55 - 24197627 -------CCCUUUUUAAAUACAGUUUUUCUUCCCUA-CACCCGUGUCAAAGCACGUGGGUUGU -------.............................-..(((((((....))))).))..... ( -8.40, z-score = -0.60, R) >droSec1.super_2 2398261 50 + 7591821 ------------UUCCUCUCAAACUGCUGUUACCUA-CACCCGUGUAAAAGCACGUGGGUUGU ------------.....((((...((((.(((((..-.....).)))).))))..)))).... ( -9.10, z-score = -0.30, R) >droSim1.chr3L 1935767 50 + 22553184 ------------UUCCUCUCAAACUGCUGUUACCUA-CACCCGUGUAAAAGCACGUGGGUUGU ------------.....((((...((((.(((((..-.....).)))).))))..)))).... ( -9.10, z-score = -0.30, R) >droWil1.scaffold_180916 1917631 63 + 2700594 UUUAGCUUAAAAAAAAGAGCCAAUAUGUCACAACUAUCAACUCGGAGCACGCACGUGUGCUGU ....((((........)))).........................((((((....)))))).. ( -10.40, z-score = 0.05, R) >consensus ____________UUCAUAUCAAAUAUCUGUUACCUA_CACCCGUGUAAAAGCACGUGGGUUGU .......................................(((((((....))))).))..... ( -6.36 = -6.33 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:33 2011