| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,366,012 – 2,366,117 |
| Length | 105 |
| Max. P | 0.923133 |
| Location | 2,366,012 – 2,366,117 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 88.68 |
| Shannon entropy | 0.19527 |
| G+C content | 0.43055 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -22.67 |
| Energy contribution | -21.67 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2366012 105 - 24543557 AAACAGUAAAUGUCGAGUUGUGGCCAAUUCGAAAUGUGGCUGUGCUGCAAAUUGCAUUACUCAUUUCCAUUUUAGCCCAUUUGGCCUUUAGUUCCCUUUGCUCCC ......((((.(((((((.(.(((.((...((((((.(...((((........))))..).))))))....)).))))))))))).))))............... ( -22.60, z-score = -0.68, R) >droEre2.scaffold_4784 2381049 96 - 25762168 AAACAGUAAAUGUCGAGCUGUGGCCAAUUUGAAAUGUGGCUGUGCUGGAAAUUGCAUUAGUGUUUUCCAUUUUUGCUCAUUUGGCCUUUAGCUCCC--------- ..............((((((.((((((......(((.(((.....((((((..((....))..)))))).....))))))))))))..))))))..--------- ( -27.70, z-score = -2.02, R) >droYak2.chr3L 14626915 96 + 24197627 AAACAGUAAAUGUCGAGCUGUGGCCAAUUCGAAAUGUGGCUGUGCUGGAAAUUGCAUUACUGAUUUCCAUUUUAGCUCAUUUGGCCUUCAGCUCCC--------- ..............((((((.((((((......(((.(((((...((((((((........))))))))...))))))))))))))..))))))..--------- ( -33.50, z-score = -3.82, R) >droSec1.super_2 2390711 100 - 7591821 AAACAGUAAAUGUCGAGCUGUGGCCAAUUCGAAAUGUGGCUGUGCUGCAAAUUGCAUUACUCAUUUCCAUUUUGGCCCAUUUGGCCUUUAGUUUGCUCCU----- ....(((((((((((((.((.((((((...((((((.(...((((........))))..).))))))....)))))))))))))).....)))))))...----- ( -30.80, z-score = -2.55, R) >droSim1.chr3L 1928213 100 - 22553184 AAACAGUAAAUGUCGAGCUGUGGCCAAUUCGAAAUGUGGCUGUGCUGCAAAUUGCAUUACUCAUUUCCAUUUUGGCCCAUUUGGCCUUUAGUUUGCUCCC----- ....(((((((((((((.((.((((((...((((((.(...((((........))))..).))))))....)))))))))))))).....)))))))...----- ( -30.80, z-score = -2.59, R) >consensus AAACAGUAAAUGUCGAGCUGUGGCCAAUUCGAAAUGUGGCUGUGCUGCAAAUUGCAUUACUCAUUUCCAUUUUAGCCCAUUUGGCCUUUAGUUCCCU________ ..............((((((.((((((......(((.((((((((........))))................)))))))))))))..))))))........... (-22.67 = -21.67 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:32 2011