| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,331,004 – 2,331,106 |
| Length | 102 |
| Max. P | 0.558576 |
| Location | 2,331,004 – 2,331,106 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 66.01 |
| Shannon entropy | 0.60158 |
| G+C content | 0.34440 |
| Mean single sequence MFE | -25.12 |
| Consensus MFE | -7.97 |
| Energy contribution | -8.40 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2331004 102 - 24543557 AUCUUGACAGGUUUAAUGGAGCAGAAAAACUUUGAACUC-UUUGAUAAGUUUA--AUAAAGUUUUAGUAUGGGCACUCGGUCUAUUUAUGUUUGAAAAGAUUCUU---------------- (((((..((..(..((((((.(((.(((((((((((((.-.......))))))--...))))))).((....)).)).).))))))...)..))..)))))....---------------- ( -17.50, z-score = 0.19, R) >droEre2.scaffold_4784 2342731 101 - 25762168 AACUUGACAGAUUUAAUGGAGCAGGGAAACUUUGAACUU-UUUGAUUAGUUUACUAAAAAGUUUUAGUAUGUGCACUC---CUGUUUAAGUUUGAAAAGAUGCUU---------------- ..(((..(((((((((.((((((.(...(((..((((((-((((..........)))))))))).))).).)))..))---)...)))))))))..)))......---------------- ( -22.60, z-score = -1.55, R) >droYak2.chr3L 14591002 90 + 24197627 AUCUUGACAGGCUUAAUGGAGCAGGGAAACUUUGAGCU----------GUUUG--AUAAAGUUUUAGCAUAGGCACUCGGCCCAUUUAAGUUUGAAAAGAUU------------------- (((((..((((((((((((.(((((....)))((((.(----------(((((--.(((....)))...))))))))))))))).)))))))))..))))).------------------- ( -26.40, z-score = -2.42, R) >droSec1.super_2 2355888 102 - 7591821 AUCUUGACAGGUUUAAUGGAGCAGAGAAACUUUGAACUC-UUUGAUAAGUUUA--AUAAAGUUUUAGCAUGGUCUCUCGGCCCAUUUAAGCUUGUAAAGAUUUUU---------------- (((((.(((((((((((((.((.((((.(((.((....(-((((.((....))--.)))))......)).))).)))).))))).)))))))))).)))))....---------------- ( -30.20, z-score = -3.33, R) >droSim1.chr3L 1892410 102 - 22553184 AUCUUGACAGGUUUAAUGGAGCAGAGAAACUUUGAACUC-UUUGAUAAGUUUA--AUAAAGUUUUAGUAUGGGCACUCGGCCCAUUUAAGCUUGUAAAGAUUUUU---------------- (((((.((((((((((.........(((((((((((((.-.......))))))--...)))))))...((((((.....)))))))))))))))).)))))....---------------- ( -28.80, z-score = -3.04, R) >droVir3.scaffold_13049 11792945 115 - 25233164 ---UUUGCCAGUUCAAGGCUGUUCAAUCACUGGAAAUUCAUUUGACGACCACUUGAGAGAGUACUUGCUC---CACGUACUUCAUUAUGGCAUAUAAAGCCUUGAAAUUGUAACAAGAUGC ---.((((...(((((((((.((((.....))))............(.(((..(((..((((((.((...---)).))))))..)))))))......)))))))))...))))........ ( -25.20, z-score = -0.58, R) >consensus AUCUUGACAGGUUUAAUGGAGCAGAGAAACUUUGAACUC_UUUGAUAAGUUUA__AUAAAGUUUUAGCAUGGGCACUCGGCCCAUUUAAGCUUGAAAAGAUUUUU________________ (((((..((((((((((((..((((.....))))..............(((((...(((....)))...))))).......))))).)))))))..))))).................... ( -7.97 = -8.40 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:26 2011