| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,316,340 – 2,316,435 |
| Length | 95 |
| Max. P | 0.732549 |
| Location | 2,316,340 – 2,316,435 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 81.32 |
| Shannon entropy | 0.32789 |
| G+C content | 0.51553 |
| Mean single sequence MFE | -29.79 |
| Consensus MFE | -19.04 |
| Energy contribution | -19.23 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732549 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2316340 95 - 24543557 UUUUUGCCAAGUCACCUGAAGAGUCCUUCGACGUGGGAAUCCCCAUCUG----CACCCC----------CCUCUGCCAGUCUGCGGUGGCU-GCAAAUAUUUAAUUAUAC ..(((((..(((((((.((((....))))((((((((....)))))..(----((....----------....)))..)))...)))))))-)))))............. ( -28.10, z-score = -2.78, R) >droAna3.scaffold_13337 366143 110 - 23293914 UUUUCGCCAUGUCACCCGUGGGGACUUCCGGCGUGAGAAUCCACACCUGCUGUCGUCGCAGGAUAUGCUCCGUCGACAGUCUGCGGUCUUUGGCGAAAAGUUAAUUACAC (((((((((......((((..(((((..(((((.(((........(((((.......))))).....))))))))..)))))))))....)))))))))........... ( -40.52, z-score = -2.33, R) >droEre2.scaffold_4784 2327737 95 - 25762168 UUUUGGCCAAGUCACCUGAAGAGUCCUCCGGCUUGGGAAUCCCCACCUG----CGCCAC----------CCUUUACCAGUCUGCGGUGGCU-GCAAAUAUUUAACUAUAC ....((((...((....)).((....)).))))((((....))))..((----((((((----------((...........).)))))).-)))............... ( -22.60, z-score = 0.21, R) >droYak2.chr3L 14576027 94 + 24197627 UUUUUGCCAAGUCACCUGAAGAGUCCUUCGGCGUGGGAAUCCCCACCUG----CGCC-C----------CCUUCGGCAGUCUGCGGUGGCU-GCAAAUAUUUAAUUAUAC ..(((((..(((((((.((((....))))((((((((....)))))...----.(((-.----------.....))).)))...)))))))-)))))............. ( -32.80, z-score = -2.70, R) >droSec1.super_2 2341255 94 - 7591821 UUUUUGCCAAGUCACCUGAAGAGUCCUUCGACGUGGGAAUUCCCAUCUG----CACC-C----------CCCUUGCCAGUCUGCGGGGGCU-GCAAAUAUUUAAUUAUAC ..........(((....((((....)))))))(((((....))))).((----((.(-(----------(((..((......))))))).)-)))............... ( -26.80, z-score = -1.40, R) >droSim1.chr3L 1877677 95 - 22553184 UUUUUGCCAAGUCACCUGAAGAGUCCUUCGACGUGGGAAUCCCCAUCUG----CACCCC----------CAUUUGGCAGUCUGCGGUGGCU-GCAAAUAUUUAAUUAUAC ..(((((..(((((((.((((....))))((((((((....))))).((----(.....----------......))))))...)))))))-)))))............. ( -27.90, z-score = -2.09, R) >consensus UUUUUGCCAAGUCACCUGAAGAGUCCUUCGACGUGGGAAUCCCCACCUG____CACC_C__________CCUUUGCCAGUCUGCGGUGGCU_GCAAAUAUUUAAUUAUAC ..(((((...((((((...((((((....)))(((((....))))).................................)))..))))))..)))))............. (-19.04 = -19.23 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:25 2011