| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,306,455 – 2,306,574 |
| Length | 119 |
| Max. P | 0.862626 |
| Location | 2,306,455 – 2,306,574 |
|---|---|
| Length | 119 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.37 |
| Shannon entropy | 0.44489 |
| G+C content | 0.46073 |
| Mean single sequence MFE | -35.94 |
| Consensus MFE | -21.31 |
| Energy contribution | -23.53 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2306455 119 + 24543557 GCGCCUUAUUGUUUUAGAUGACUGUCAUUAGAUUUGAUGGCUCAACUGAGUGUUGGGCAAAA-CCGGAGCCUGACACGUCCGAGCUUUUGAGGCUUAAAGGCUUGCAGCGAACCAGCUGC ..(((((......((((.(((((((((.......)))))).))).))))((((..(((....-.....)))..))))....(((((.....))))).)))))..(((((......))))) ( -42.20, z-score = -2.47, R) >droAna3.scaffold_13337 356380 106 + 23293914 GCGCCUUAUUGUUUCAGAUGACUGUCAUUAGAUUUGAUGGCUCAACUGUUUAU-----AAAAUUCAGAGCCUGGCAGGAC-GAGCUUUCG-GGCUUAAAGGCUUGCUGGGGAC------- (((((((.((((..(((.(((((((((.......)))))).))).)))...))-----))......((((((((.((...-...)).)))-))))).)))))..)).......------- ( -30.60, z-score = -0.94, R) >droEre2.scaffold_4784 2318003 119 + 25762168 GCGCCUUAUUGUUUUAGAUGACUGUCAUUAGAUUUGAUGGCUCAACUGAGUGUUGGGCAAAA-CCGGAGCCUGACACGUCCGAGCUUUUGAGGCUUAAAGGCUUGCAGCGAACCAGCAGC (((((((......((((.(((((((((.......)))))).))).))))((((..(((....-.....)))..))))....(((((.....))))).)))))..)).((......))... ( -37.30, z-score = -0.98, R) >droYak2.chr3L 14565195 119 - 24197627 GCGCCUUAUUGUUUUAGAUGACUGUCAUUAGAUUUGAUGGCUCAACUGAGUGUUGGGCAAAA-CCGGAGCCUGACACGUCCGAGCUUUUGAGGCUUAAAGGCUUGGAGCGAACCAGCAGC .(((.........((((.(((((((((.......)))))).))).))))((((..(((....-.....)))..)))).(((((((((((((...)))))))))))))))).......... ( -41.40, z-score = -2.33, R) >droSec1.super_2 2331782 120 + 7591821 GCGCCUUAUUGUUUUAGAUGACUGUCAUUAGAUUUGAUGGUUCAACUGAGUGUUGGGCAAAAACCGGAGCCUGACACGUCCGAGCUUUUGAGGCUUAAAGGCUUGCAGCGAACCAGCAGC (((((((......((((.(((((((((.......)))))).))).))))((((..(((..........)))..))))....(((((.....))))).)))))..)).((......))... ( -37.20, z-score = -1.22, R) >droSim1.chr3L 1868602 119 + 22553184 GCGCCUUAUUGUUUUAGAUGACUGUCAUUAGAUUUGAUGGCUCAACUGAGUGUUGGGCAAAA-CCGGAGCCUGACACGUCCGAGCUUUUGAGGCUUAAAGGCUUGCAGCGAACCAGCAGC (((((((......((((.(((((((((.......)))))).))).))))((((..(((....-.....)))..))))....(((((.....))))).)))))..)).((......))... ( -37.30, z-score = -0.98, R) >droVir3.scaffold_13049 11767734 108 + 25233164 -------AUUAUUUUAGAUGGCUGUCAUUCUAGUUAGGAAAACA-CUAUUUGUUACACAGAAAUUAAUUUCUGUGGCAUC-ACGCUUUAAAGCGUUUAGUGUUAAUAAAAAGGUAAA--- -------.(((((((...((((((......))))))....((((-(((.......((((((((....)))))))).....-(((((....))))).)))))))......))))))).--- ( -25.60, z-score = -2.73, R) >consensus GCGCCUUAUUGUUUUAGAUGACUGUCAUUAGAUUUGAUGGCUCAACUGAGUGUUGGGCAAAA_CCGGAGCCUGACACGUCCGAGCUUUUGAGGCUUAAAGGCUUGCAGCGAACCAGCAGC .(((.........((((.(((((((((.......)))))).))).))))(((((((((..........)))))))))...(((((((((((...)))))))))))..))).......... (-21.31 = -23.53 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:24 2011