| Sequence ID | dm3.chr2L |
|---|---|
| Location | 448,086 – 448,190 |
| Length | 104 |
| Max. P | 0.733838 |
| Location | 448,086 – 448,190 |
|---|---|
| Length | 104 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 68.73 |
| Shannon entropy | 0.60956 |
| G+C content | 0.44534 |
| Mean single sequence MFE | -32.29 |
| Consensus MFE | -6.54 |
| Energy contribution | -6.82 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.62 |
| Mean z-score | -2.73 |
| Structure conservation index | 0.20 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.733838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 448086 104 + 23011544 AACGAAUCGGGCCAGCGGUAGAAUCAAGUGAAAAGCAUUCAAAUCGGCUAUGAAAUGGUUUGAAAUGGGUUU--GCUUGCUCCGAUCGCUGGACGAAGGGAACUAA ......(((..((((((((.....((((..((...(((((((((((.........))))))).))))..)).--.)))).....)))))))).)))((....)).. ( -33.40, z-score = -2.53, R) >droSim1.chr2L 454998 104 + 22036055 AACGAAUCGGGCCAGCGAUAGAAUCAAGUGAAAAGCAUUCAAAUCGGCUAUGAAAUGGUUUGAGAUGGGUUU--GCUUGCUCCGAUCGCUGGACGAAAGGAACUAA ......(((..((((((((.....((((..((...(((((((((((.........)))))))).)))..)).--.)))).....)))))))).))).......... ( -33.10, z-score = -2.60, R) >droSec1.super_14 432022 104 + 2068291 AACGAAUCGGGCCAGCGAUAGAAUCAAGUGAAAAGCAUUCAAAUCGGCUAUGAAAUGGUUUGAGAUGGGUUU--GCUUGCUCCCAUCGCUGGACGAAGGGAACUAA ......(((..((((((((.(...((((..((...(((((((((((.........)))))))).)))..)).--.))))...).)))))))).)))((....)).. ( -33.00, z-score = -2.20, R) >droYak2.chr2L 433248 104 + 22324452 AACGAAUCGGGCCAGCGAAAGAAUGAAGUGAAAACCAUUCAAAUCGGCUAUCAAAUGGUUUGAAAUGGGUUU--GCUUGCUUCGAUUGCUGGUCGAAGGGAACUAA .........(((((((((..(((..(((..((..((((((((((((.........))))))).))))).)).--.)))..)))..)))))))))..((....)).. ( -34.10, z-score = -3.25, R) >droEre2.scaffold_4929 500587 104 + 26641161 AACGAAUCGGGCCAGCGAUAGAAUCAAGUAGAAAGCAUUCAAAUCGGCCAAGAAAUGGUUUGAAAUGGGUUC--GCUUGCUUCGAUUGCUGGUCGAAGGGAACUAA .........((((((((((.(((.(((((.(((..(((((((((((.........))))))).))))..)))--))))).))).))))))))))..((....)).. ( -35.80, z-score = -3.31, R) >droAna3.scaffold_12943 240335 98 - 5039921 AACGAAUCGGGCCGGCAAGUGUAUCGGUUUGGGA--------AACGGUUACGAAACGGUAAACCAUAUUUUUCUACCCGAUACGGUUGCUGGUCGAAGGGAACUAA .........(((((((((.((((((((..(((((--------((.((((((......)).))))....))))))).)))))))).)))))))))..((....)).. ( -37.30, z-score = -3.43, R) >dp4.chr4_group3 10510253 85 - 11692001 AACGAAUCGGAUC--------CAUCGAAUGGUCA-----------UACGAUCGAAUAUAUACAUAUCGUAUC--GUAUCGGACAUUCGCUGGACGAAAGGAACUAA ......(((..((--------((.((((((..((-----------(((((((((.(((....)))))).)))--)))).)..)))))).))))))).......... ( -25.80, z-score = -2.27, R) >droPer1.super_1 7630478 85 - 10282868 AACGAAUCGGAUC--------CAUCGAAUGGUCA-----------UACGAUCGAAUAUAUACAUAUCGUAUC--GUAUCGGACAUUCGCUGGACGAAAGGAACUAA ......(((..((--------((.((((((..((-----------(((((((((.(((....)))))).)))--)))).)..)))))).))))))).......... ( -25.80, z-score = -2.27, R) >consensus AACGAAUCGGGCCAGCGAUAGAAUCAAGUGAAAAGCAUUCAAAUCGGCUAUGAAAUGGUUUGAAAUGGGUUU__GCUUGCUACGAUCGCUGGACGAAGGGAACUAA ......(((..(((((((.............................((((.............))))((........)).....))))))).))).......... ( -6.54 = -6.82 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:52 2011