| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,226,476 – 2,226,587 |
| Length | 111 |
| Max. P | 0.685255 |
| Location | 2,226,476 – 2,226,587 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.17 |
| Shannon entropy | 0.41052 |
| G+C content | 0.53524 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -14.85 |
| Energy contribution | -15.26 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2226476 111 + 24543557 UGCUUACACCGAGCCACCUCCCCCGUCCCCAUUGUCGUGUAUUCGUACUCGUAUACAUUCUCCAUGGGGGCUUAUUAAAUGAUUGACCUAGGCUCCUCAUUUACCUCCUCC--- ..........(((((.........((((((((.(..((((((.((....)).))))))...).))))))))...((((....))))....)))))................--- ( -28.30, z-score = -2.98, R) >droAna3.scaffold_13337 22682055 91 - 23293914 UGCUUACAC--AGUCCCCGA----GUUCCGUGC----------------CGGCUCCUGCCUCUG-GGGGGCUUGUUAAAUGAUUGACCUAGGCUCCCUAUCCGCCUCCACCUCC .........--.......((----(......((----------------.(((....)))..((-(((((((((((((....)))))..))))))))))...))......))). ( -23.80, z-score = 0.54, R) >droEre2.scaffold_4784 2222907 92 + 25762168 UGCUUACACCGGGCCACCU---CCGUCCCCAUC----------------CAUACACAUUCUCCAUGGGGGCUUAUUAAAUGAUUGACCUAGGCUCCUCACUCAGCUCCUCC--- .(((......(((((....---..((((((((.----------------..............))))))))...((((....))))....))))).......)))......--- ( -20.28, z-score = -0.44, R) >droYak2.chr3L 2180789 92 + 24197627 UGCUUACACCGAGCCACCG---CCGUCCCCUUC----------------CAAACACAUUCUCCAUGGGGGCUUAUUAAAUGAUUGACCUAGGCUCCUCACUUACAUCCUCC--- ..........(((((....---..((((((...----------------................))))))...((((....))))....)))))................--- ( -18.01, z-score = -0.96, R) >droSec1.super_2 2252247 105 + 7591821 UGCUUACACCGAGCCACCUAGCCCGUCCCCAUCCUCGUGUAU------UCGUAUACAUUCUCCAUGGGGGCUUAUUAAAUGAUUGACCUAGGCUCCUCACUCACCUCCUCC--- ..........(((((.........((((((((....((((((------....)))))).....))))))))...((((....))))....)))))................--- ( -25.40, z-score = -2.11, R) >droSim1.chr3L 1782478 111 + 22553184 UGCUUACACCGAGCCACCUAGCCCGUCCCCAUCCUCGUGUAUUCGUACUCGUAUACAUUCUCCAUGGGGGCUUAUUAAAUGAUUGACCUAGGCUCUUCACUCACCUCCUCC--- ..........(((((.........((((((((....((((((.((....)).)))))).....))))))))...((((....))))....)))))................--- ( -27.80, z-score = -2.72, R) >consensus UGCUUACACCGAGCCACCUA__CCGUCCCCAUC________________CGUAUACAUUCUCCAUGGGGGCUUAUUAAAUGAUUGACCUAGGCUCCUCACUCACCUCCUCC___ ..........(((((.........((((((((...............................))))))))...((((....))))....)))))................... (-14.85 = -15.26 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:18 2011