| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,213,087 – 2,213,180 |
| Length | 93 |
| Max. P | 0.954489 |
| Location | 2,213,087 – 2,213,180 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.46 |
| Shannon entropy | 0.35223 |
| G+C content | 0.37318 |
| Mean single sequence MFE | -25.46 |
| Consensus MFE | -16.89 |
| Energy contribution | -16.84 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2213087 93 + 24543557 ------------------CUUUG-AACAAUUUGAAACACUUGGGCAUACAAUA-UGUUGAAAUGAUAAUGAGGCGAAAUUGUUUUUUGACUC-GCUCCC-AGGUGUUUCUGUUUC--- ------------------....(-((((....((((((((((((....(((..-..)))..........(((.(((((.....))))).)))-...)))-)))))))))))))).--- ( -25.60, z-score = -3.01, R) >droSim1.chr3L 1769486 93 + 22553184 ------------------CUUUG-AACAAUUUGAAACACUUGGGCAUACAAUA-UGUUGAAAUGAUAAUGAGGCGAAAUUGUUUUUUGACUC-GCUCCC-AGGUGUUUCUGUUUC--- ------------------....(-((((....((((((((((((....(((..-..)))..........(((.(((((.....))))).)))-...)))-)))))))))))))).--- ( -25.60, z-score = -3.01, R) >droSec1.super_2 2239155 93 + 7591821 ------------------CUUUG-AACAAUUUGAAACACUUGGGCAUACAAUA-UGUUGAAAUGAUAAUGAGGCGAAAUUGUUUUUUGACUC-GCUCCC-AGGUGUUUCUGUUUC--- ------------------....(-((((....((((((((((((....(((..-..)))..........(((.(((((.....))))).)))-...)))-)))))))))))))).--- ( -25.60, z-score = -3.01, R) >droYak2.chr3L 2167242 92 + 24197627 -------------------UUUG-AACAAUUUGAAACACUUGGGCAUACAAUA-UGUUGAAAUGAUAAUGAGGCGAAAUUGUUUUUUGACUC-GCUCCC-AGGUGUUUCUGUUUC--- -------------------...(-((((....((((((((((((....(((..-..)))..........(((.(((((.....))))).)))-...)))-)))))))))))))).--- ( -25.60, z-score = -3.04, R) >droEre2.scaffold_4784 2208373 92 + 25762168 -------------------UUUG-AACAAUUUGAAACACUUGGGCAUACAAUA-UGUUGAAAUGAUAAUGAGGCGAAAUUGUUUUUUGACUC-GCUCCC-AGGUGUUUCUGUUUC--- -------------------...(-((((....((((((((((((....(((..-..)))..........(((.(((((.....))))).)))-...)))-)))))))))))))).--- ( -25.60, z-score = -3.04, R) >droAna3.scaffold_13337 22668121 89 - 23293914 -------------------UUUG-AACAAUUUGAAGCACUUGGGCAUACAAUAAUGUUGAAAUGAUAAUGAGGCGAAAUUGUUUUUUGACUC-GCUCCCCAGGUGUUUUC-------- -------------------....-........((((((((((((....((((...))))..........(((.(((((.....))))).)))-....)))))))))))).-------- ( -22.50, z-score = -1.96, R) >dp4.chrXR_group6 12130547 95 + 13314419 ------------------CUUGG-AACAAUUUGAAACACUUGGGCAUACAAUA-UGUUGAAAUGAUAAUGAGCGAAAAUUGUUUUUUGACUCCGUUCCCCAGGUGUUUUUGGGGG--- ------------------.....-..(.....((((((((((((...((....-.((..(((.((((((........)))))))))..))...))..))))))))))))....).--- ( -23.50, z-score = -1.11, R) >droPer1.super_33 151969 95 + 967471 ------------------CUUGG-AACAAUUUGAAACACUUGGGCAUACAAUA-UGUUGAAAUGAUAAUGAGCGAAAAUUGUUUUUUGACUCCGUUCCCCAGGUGUUUUUGGGGG--- ------------------.....-..(.....((((((((((((...((....-.((..(((.((((((........)))))))))..))...))..))))))))))))....).--- ( -23.50, z-score = -1.11, R) >droWil1.scaffold_180916 1539425 94 - 2700594 ------------------CUUUG-AACAAUUUGAAACACUUGGGCAUACAAUA-UGUUGAAAUGAUAAUGAGCGAAAAUUGUUUUUUGACUU-GCUCCCCAGGUGUUUUUUUUUU--- ------------------.....-........((((((((((((....(((..-.((..(((.((((((........)))))))))..))))-)...))))))))))))......--- ( -22.60, z-score = -2.73, R) >droVir3.scaffold_13049 13335195 110 - 25233164 UUGCUCACUGUCUAGCUCUUUUG-AACAAUCUGAAGCACUUGGUCAUACAACA-UGCUGAAAUGAUAAUGAGCGUAAAUUGUUUUUUGACUC-GCUCCCCAGGUGUUUUGUUU----- ..(((........))).......-........(((((((((((........((-(......))).....(((((......(((....))).)-)))).)))))))))))....----- ( -22.80, z-score = -0.30, R) >droMoj3.scaffold_6680 8929936 110 + 24764193 UUAUUCACUGUCUAGCUCUUUUG-AACAAUCUGAAACACUUGGGCAUACAGCA-UGCUGAAAUGAUAAUGAGCGAAAAUUGUUUUUUGACUC-GCUCCCCAGGUGUUUUGUUU----- .......................-........((((((((((((....(((..-..)))..........((((((.....(((....)))))-))))))))))))))))....----- ( -27.80, z-score = -1.98, R) >droGri2.scaffold_15110 13221529 116 - 24565398 UGAUGCUUUAACUAGCUCUUCUGCAGCAAUCUGACACACUUGGGCAUUCAACA-UGUUGAAAUGAUAAUGAGCGAAAAUUGUUUUUUGACUC-GCUCCCCAGGUGUCUUGUGUGUUGC .((.(((......)))))....((((((...(((.((((((((((((((((..-..))).)))).....((((((.....(((....)))))-))))))))))))).)))..)))))) ( -34.80, z-score = -2.55, R) >consensus __________________CUUUG_AACAAUUUGAAACACUUGGGCAUACAAUA_UGUUGAAAUGAUAAUGAGCCGAAAUUGUUUUUUGACUC_GCUCCCCAGGUGUUUUUGUUUC___ ................................((((((((((((...........(((((((.((((((........)))))))))))))......))).)))))))))......... (-16.89 = -16.84 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:17 2011