| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,209,606 – 2,209,696 |
| Length | 90 |
| Max. P | 0.919867 |
| Location | 2,209,606 – 2,209,696 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 87.63 |
| Shannon entropy | 0.20948 |
| G+C content | 0.54610 |
| Mean single sequence MFE | -23.92 |
| Consensus MFE | -21.77 |
| Energy contribution | -21.61 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2209606 90 + 24543557 -------AGUCCGUGGUCCGUAGUCCAAAAUCCGGGGAACGAGUAAAAGUCCGGAAUCGAAAACACGGAGUGCAGCAGCAGCCACUGCAGCACCGUC -------..((((((.((.((.........(((((...((........))))))))).))...))))))((((.((((......)))).)))).... ( -26.00, z-score = -1.02, R) >droSim1.chr3L 1765952 90 + 22553184 -------AGUCCGUGGUCCGUAGUCCAAAAUCCGGAGAACGAGUAAAAGUCCGGAAUCGAAAACACGGAGUGCAGCAGCAGCCACUGCAGCACCGUC -------..((((((.((.((.........((((((.............)))))))).))...))))))((((.((((......)))).)))).... ( -26.72, z-score = -1.97, R) >droSec1.super_2 2235620 90 + 7591821 -------AGUCCGUGGUCUGUAGUCCAAAAUCCGGAGAACGAGUAAAAGUCCGGAAUCGAAAACACGGAGUGCAGCAGCAGCCACUGCAGCACCGUC -------..((((((.((((.....))...((((((.............))))))...))...))))))((((.((((......)))).)))).... ( -27.62, z-score = -2.05, R) >droYak2.chr3L 2163648 94 + 24197627 AGUCCGAAGUCCGAAGUCCGCAGUCCAAAAUCCGGAGAACGAGCAAAAGUCCGGAAUCGAAAACAUGGAGUGCAGCAGC---CACUGCAGCACCAUC ...................(((.((((...((((((.............))))))...(....).)))).))).((((.---..))))......... ( -20.82, z-score = -0.41, R) >droEre2.scaffold_4784 2204756 94 + 25762168 AGUCAGGAGGCAGGAGUCCGUAGUCCAAAAUCCGUAGAAAGAGUAAAAGUCCGGAAUCGAAAACAUGGAGUGCAGCAGC---CACUGCAGCACCGUC .....((..((........(((.((((...((((.................))))...(....).)))).))).((((.---..)))).)).))... ( -18.43, z-score = 0.27, R) >consensus _______AGUCCGUGGUCCGUAGUCCAAAAUCCGGAGAACGAGUAAAAGUCCGGAAUCGAAAACACGGAGUGCAGCAGCAGCCACUGCAGCACCGUC ................(((((.........((((((.............)))))).........)))))((((.((((......)))).)))).... (-21.77 = -21.61 + -0.16)
| Location | 2,209,606 – 2,209,696 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 87.63 |
| Shannon entropy | 0.20948 |
| G+C content | 0.54610 |
| Mean single sequence MFE | -29.41 |
| Consensus MFE | -25.40 |
| Energy contribution | -26.04 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2209606 90 - 24543557 GACGGUGCUGCAGUGGCUGCUGCUGCACUCCGUGUUUUCGAUUCCGGACUUUUACUCGUUCCCCGGAUUUUGGACUACGGACCACGGACU------- ....((((.(((((....))))).))))((((((..(((((.(((((...............)))))..)))))(....)..))))))..------- ( -31.76, z-score = -2.29, R) >droSim1.chr3L 1765952 90 - 22553184 GACGGUGCUGCAGUGGCUGCUGCUGCACUCCGUGUUUUCGAUUCCGGACUUUUACUCGUUCUCCGGAUUUUGGACUACGGACCACGGACU------- ....((((.(((((....))))).))))((((((..(((((.((((((.............))))))..)))))(....)..))))))..------- ( -33.02, z-score = -2.95, R) >droSec1.super_2 2235620 90 - 7591821 GACGGUGCUGCAGUGGCUGCUGCUGCACUCCGUGUUUUCGAUUCCGGACUUUUACUCGUUCUCCGGAUUUUGGACUACAGACCACGGACU------- ....((((.(((((....))))).))))((((((........((((((.............)))))).((((.....)))).))))))..------- ( -31.02, z-score = -2.47, R) >droYak2.chr3L 2163648 94 - 24197627 GAUGGUGCUGCAGUG---GCUGCUGCACUCCAUGUUUUCGAUUCCGGACUUUUGCUCGUUCUCCGGAUUUUGGACUGCGGACUUCGGACUUCGGACU .((((.(.((((((.---...))))))).))))...(((((.((((((.....(..(((..((((.....))))..)))..)))))))..))))).. ( -30.80, z-score = -1.67, R) >droEre2.scaffold_4784 2204756 94 - 25762168 GACGGUGCUGCAGUG---GCUGCUGCACUCCAUGUUUUCGAUUCCGGACUUUUACUCUUUCUACGGAUUUUGGACUACGGACUCCUGCCUCCUGACU ...((.(.((((((.---...))))))).))..((.(((((.((((.................))))..)))))..))(((........)))..... ( -20.43, z-score = -0.18, R) >consensus GACGGUGCUGCAGUGGCUGCUGCUGCACUCCGUGUUUUCGAUUCCGGACUUUUACUCGUUCUCCGGAUUUUGGACUACGGACCACGGACU_______ ....((((.(((((....))))).))))((((((..(((((.(((((...............)))))..))))).))))))................ (-25.40 = -26.04 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:16 2011