| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,160,578 – 2,160,674 |
| Length | 96 |
| Max. P | 0.805795 |
| Location | 2,160,578 – 2,160,674 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 62.57 |
| Shannon entropy | 0.68064 |
| G+C content | 0.46936 |
| Mean single sequence MFE | -20.69 |
| Consensus MFE | -9.27 |
| Energy contribution | -9.50 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2160578 96 + 24543557 -------UAAUUCACUUCUUGAGUUGUG------------UCCAACCUAAGCUAUUAGCUUACCUCUCCCUUGACCUGGGACUUGGUGCACGGCUCCACAUGCUUCUCCCAGAAG -------.............((((((((------------(((((..(((((.....)))))....((((.......)))).)))).)))))))))......((((.....)))) ( -26.80, z-score = -2.58, R) >droSim1.chr3L 1716398 75 + 22553184 ----------------------------------------UCCAAUCUAAGCUAUUAGCUUACCUCUCCCUUGACCUGGGACUUGGUGCACGGCUCCACAUGCUUCUCCCAGAAG ----------------------------------------.......(((((.....))))).............((((((...((.(((.(......).))).))))))))... ( -16.60, z-score = -0.72, R) >droSec1.super_2 2186637 75 + 7591821 ----------------------------------------UCCAAUCUAAGUUAUCAGCUCACCUCUCCCUUGACCUGGGACUUGGUGCACGGCUCCACAUGCUUCUCCCAGAAG ----------------------------------------................((((((((..((((.......))))...))))...)))).......((((.....)))) ( -15.90, z-score = -0.31, R) >droYak2.chr3L 2113658 110 + 24197627 CUAAUUAUAAUUUCAUUCAUGAGUUGAG-----UUGUUGCUUCGACUAAUGUUAUUAGCUUACCUCUCCCUUGACCUGGGACUUGGUGCACGGCUCCACAUGCUUCUCCCAGAAG ......................((.(((-----((((.(((..(((....)))...))).((((..((((.......))))...)))).))))))).))...((((.....)))) ( -24.20, z-score = -0.79, R) >droEre2.scaffold_4784 2155586 111 + 25762168 ---CUUGUAAUUCCAUUCCUGUGUUGUUGCACUUUGUUACUUCAACUAAGGUUAUU-GCUUACCUCUCCCUUGACCUGGGACUUGGUGCACGGCUCCACAUGCUUCUCCCAGAAG ---..((((((..(((....)))..))))))........((((.....((((((..-..............))))))((((...((.(((.(......).))).)))))).)))) ( -23.29, z-score = -0.42, R) >apiMel3.Group7 5807857 114 + 9974240 -UUGGUGUACAUUUUGAUAUAAUUCCGUUUAUUUUCUUAUUCUAAUUUUUGCAGAUAACGAACCUCUCCUUCUUUGUGCGAUUUCGUGCAACUGUCCACCCUUUUGUCCCAGAAG -..((((.(((...............(((..((.(((...............))).))..)))..........(((..((....))..))).))).))))((((((...)))))) ( -17.36, z-score = -1.33, R) >consensus _______UAAUU___UUC_UGAGUUG______________UCCAACCUAAGCUAUUAGCUUACCUCUCCCUUGACCUGGGACUUGGUGCACGGCUCCACAUGCUUCUCCCAGAAG ................................................((((.....))))..............((((((...((.(((.(......).))).))))))))... ( -9.27 = -9.50 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:11 2011