| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,154,810 – 4,154,901 |
| Length | 91 |
| Max. P | 0.946738 |
| Location | 4,154,810 – 4,154,901 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 79.74 |
| Shannon entropy | 0.35724 |
| G+C content | 0.55965 |
| Mean single sequence MFE | -31.45 |
| Consensus MFE | -15.43 |
| Energy contribution | -16.27 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946738 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4154810 91 + 23011544 CGACGUUGCUAAAAAGAGAUGGGUAGAGCCGCG-GCGAA--------------AGAGACGACAGUGUUGGCC-GUUGG-AAAAUGAAGUACAAUGGCCGACGGGCUAC ...(((..((....))..))).....(((((((-.(...--------------.)...)).)..((((((((-((((.-...........)))))))))))))))).. ( -29.80, z-score = -3.02, R) >droSim1.chr2L 4110514 92 + 22036055 CGACGCAGCUAAAAAGAGAUGGGUAGAGCCGCG-GCGAA--------------AGAGACGGCAGUGUAGGCCCGUUGG-AAAAUGAAGUACAAUGGCCGACGGGCUAC ..((((..(((........))).....(((((.-.(...--------------.).).)))).)))).((((((((((-..(.((.....)).)..)))))))))).. ( -32.50, z-score = -3.34, R) >droSec1.super_5 2253210 92 + 5866729 CGACGCAGCUAAAAAGAGAUGGGUAGAGCCGCG-GCGAA--------------AGAGACGGCAAUGUUGGCUCGUUGC-AAAAUGAAGUACAAUGGCCGACGGGCUAC ......((((.................(((((.-.(...--------------.).).))))..(((((((.(((((.-...........)))))))))))))))).. ( -27.20, z-score = -1.24, R) >droYak2.chr2L 4180842 91 + 22324452 CGACGGAGCUAAAAAGAGAUGGCCAGAGCCGCA-GCGAG--------------AGAGACGGCAGUGUUGGCC-GUUGG-AAAAUGAAGUACAAUGGCCGACGGGCUAC ...................(((((...((((..-.(...--------------.)...))))..((((((((-((((.-...........))))))))))))))))). ( -34.20, z-score = -4.27, R) >droEre2.scaffold_4929 4219719 92 + 26641161 CGACGGAGCUAAAAAGAGAUGGCUAGAGCCGCCCGCGAA--------------AGAGACGGCAGUGUUGGCC-GUUGG-AAAAUGAAGUACAAUGGCCGACGGGCUAC ......(((((........)))))..(((((((..(...--------------.)....)))..((((((((-((((.-...........)))))))))))))))).. ( -35.10, z-score = -3.89, R) >droAna3.scaffold_12943 726357 108 - 5039921 CGACAGAGCUAAAAAAUGAGGGGGGGGUCGGAGAAGGAUCUGGUCCGGACUCCGGAGGCAGGAAGAGCGGGCAAUGGCUGAAAUGAAGUACAAUGGCCGACAGGCUAC ......((((.........((((.((..((((......))))..))...)))).............((((.((.(((((.......))).)).)).))).).)))).. ( -29.90, z-score = -1.02, R) >consensus CGACGGAGCUAAAAAGAGAUGGGUAGAGCCGCG_GCGAA______________AGAGACGGCAGUGUUGGCC_GUUGG_AAAAUGAAGUACAAUGGCCGACGGGCUAC ......((((.................((((...........................))))..((((((((.((((.............)))))))))))))))).. (-15.43 = -16.27 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:32 2011