| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,145,696 – 2,145,749 |
| Length | 53 |
| Max. P | 0.513517 |
| Location | 2,145,696 – 2,145,749 |
|---|---|
| Length | 53 |
| Sequences | 9 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 76.81 |
| Shannon entropy | 0.48390 |
| G+C content | 0.39132 |
| Mean single sequence MFE | -12.91 |
| Consensus MFE | -4.84 |
| Energy contribution | -3.97 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.82 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2145696 53 + 24543557 CUGUCAGUUAGGGCUGGAAUU----UUUCAAUUACUGAUAAGAUUUACGGCCA-AUUC ...........((((((((((----(((((.....))).))))))).))))).-.... ( -12.20, z-score = -2.03, R) >droSim1.chr3L 1701566 53 + 22553184 CUGUCAGUUAGGGCUGGAAUU----UUUCAAUUACUGAUAAGAUUUACGGCCA-AUUC ...........((((((((((----(((((.....))).))))))).))))).-.... ( -12.20, z-score = -2.03, R) >droYak2.chr3L 2098698 53 + 24197627 CUGCCAGUUAGGUCUGGAAUU----UUUCAAUUACUGAUAAGAUUUACGGCCA-AUUC ..........((((..(((((----(((((.....))).)))))))..)))).-.... ( -9.80, z-score = -0.92, R) >droEre2.scaffold_4784 2140574 53 + 25762168 CCGUCAGUUAGGGCUGGAAUU----UUUCAAUUACUGAUAAGAUUUACGGCCA-AUUC ...........((((((((((----(((((.....))).))))))).))))).-.... ( -12.20, z-score = -1.90, R) >droAna3.scaffold_13337 22607970 53 - 23293914 CUCCCAGUUAGGGCUGGAAUU----UUUCAAUUACUGAUAAGAUUUACGGCCC-AUUC ..........(((((((((((----(((((.....))).))))))).))))))-.... ( -15.70, z-score = -2.82, R) >dp4.chrXR_group6 12053880 54 + 13314419 CUGUCGGUUAGGGCUGGAAUU----UUUCAAUUACUGAUAAGAUUUACAGCCCCAUUC ..........(((((((((((----(((((.....))).))))))).))))))..... ( -15.50, z-score = -2.62, R) >droPer1.super_33 76457 54 + 967471 CUGUCGGUUAGGGCUGGAAUU----UUUCAAUUACUGAUAAGAUUUACAGCCCCAUUC ..........(((((((((((----(((((.....))).))))))).))))))..... ( -15.50, z-score = -2.62, R) >droWil1.scaffold_180916 1452016 55 - 2700594 CUGUCAGUUAGGGUUGGAAUUCA--UUCCAAUCAUUGAUUAGAUUUAUAGUCA-AUGC ...........((((((((....--))))))))((((((((......))))))-)).. ( -14.90, z-score = -3.11, R) >droVir3.scaffold_13049 13264202 55 - 25233164 --CGAAGAGAGGUCCACGACAAGAGCCAUAAUUUUUUUGCAGCAUUCUUGCUAAGUU- --((((((((((..(.......)..))....)))))))).((((....)))).....- ( -8.20, z-score = 0.15, R) >consensus CUGUCAGUUAGGGCUGGAAUU____UUUCAAUUACUGAUAAGAUUUACGGCCA_AUUC ..((((((......(((((......)))))...))))))................... ( -4.84 = -3.97 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:08 2011