| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,142,143 – 2,142,235 |
| Length | 92 |
| Max. P | 0.979030 |
| Location | 2,142,143 – 2,142,235 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 76.43 |
| Shannon entropy | 0.48774 |
| G+C content | 0.53030 |
| Mean single sequence MFE | -33.14 |
| Consensus MFE | -20.98 |
| Energy contribution | -22.46 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.979030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2142143 92 - 24543557 GUGCGAGUUCGGAGGCAGCUUCUGGUGGUGCUACCAAAAUUAGAAGCUGCUUCGGGAGCAGGUUUGCUUUUCCCUCGCUGCACGAGAUCAUC- ((((.(((...(((((((((((((((..((....))..)))))))))))))))(((((.(((....))))))))..))))))).........- ( -40.40, z-score = -3.27, R) >droAna3.scaffold_13337 22604421 84 + 23293914 ---CAGCAUCUGCUCCUGCUUCUGGUGGAACUACCAAAAUUAGAAGCUGCUGCUG--CCAGAGCAGGUUUUCC----CUGCACGAGAUCAUCA ---(((((.(.(((.(((.((.(((((....))))).)).))).))).).)))))--.....(((((.....)----))))............ ( -25.90, z-score = -0.84, R) >droEre2.scaffold_4784 2137082 92 - 25762168 CUGCGAGUUCGGAGGCAGCUUCUGGUGGUGCUACCAAAAUUAGAAGCUGCUUCGGGAGCAGGUUUGCUUUUCCCUCGCUGCACGAGAUCAUC- ....((.(((((((((((((((((((..((....))..)))))))))))))))(((((.(((....))))))))........)))).))...- ( -38.10, z-score = -2.54, R) >droYak2.chr3L 2095198 92 - 24197627 CUGCGAGUUCGGAGGCAGCUUCUGGUGGUGCUACCAAAAUUAGAAGCGGCUUCGGGAGCAGGUUUGCUUUUCCCUCGCUGCACGAGAUCAUC- ....((.(((((((((.(((((((((..((....))..))))))))).)))))(((((.(((....))))))))........)))).))...- ( -33.50, z-score = -1.03, R) >droSec1.super_2 2168469 92 - 7591821 GUGCGAGUUCGGAGGCAGCUUCUGGUGGUGCUACCAAAAUUAGAAGCUGCUUCGGGAUCAGGUUUGCUUUUCCAUCGCUGCACGAGAUCAUC- ((((.(((...(((((((((((((((..((....))..))))))))))))))).(((..((.....))..)))...))))))).........- ( -36.10, z-score = -2.73, R) >droSim1.chr3L 1698058 92 - 22553184 GUGCGAGUUCGGAGGCAGCUUCUGGUGGUGCUACCAAAAUUAGAAGCUGCUUCGGGAGCAGGUUUGCUUUUCCCUCGCUGCACGAGAUCAUC- ((((.(((...(((((((((((((((..((....))..)))))))))))))))(((((.(((....))))))))..))))))).........- ( -40.40, z-score = -3.27, R) >droGri2.scaffold_15110 13152320 79 + 24565398 ---------GUGCAUCGAUGACUCGUUG-ACUACCAAAAUUAGAAGCUGCUGU-GCAGCAUUGUCGUCGUCUUGGUCUUGCUCUCGGUCU--- ---------(.(((.(((((((...(((-.....)))........(((((...-)))))...))))))).........))).).......--- ( -17.60, z-score = 0.53, R) >consensus GUGCGAGUUCGGAGGCAGCUUCUGGUGGUGCUACCAAAAUUAGAAGCUGCUUCGGGAGCAGGUUUGCUUUUCCCUCGCUGCACGAGAUCAUC_ ....((.(((((((((((((((((.(((.....)))....))))))))))))).(((((......)))))............)))).)).... (-20.98 = -22.46 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:07 2011