| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,135,753 – 2,135,809 |
| Length | 56 |
| Max. P | 0.659867 |
| Location | 2,135,753 – 2,135,809 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 78.79 |
| Shannon entropy | 0.32900 |
| G+C content | 0.29861 |
| Mean single sequence MFE | -6.02 |
| Consensus MFE | -4.45 |
| Energy contribution | -3.95 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2135753 56 - 24543557 UCUUUCUUUUCACAAUUAAGUGUUCACUUUGAUAUUAAUAACCUGUUAAUAUUUCC ..........(((......)))........(((((((((.....)))))))))... ( -5.10, z-score = -1.37, R) >droSec1.super_2 2162209 54 - 7591821 --UCUUUAUUCACAAUUAAGUGUUCCGUUUGAUAUUAAUAACCUGUUAAUAUUUCC --........(((......)))........(((((((((.....)))))))))... ( -5.10, z-score = -1.32, R) >droYak2.chr3L 2088644 54 - 24197627 --GCUUCAUUCAUUCUUAAGUGUUGCGUCCGAUGUUAAUAGCCUAUUAAUAUUUCC --((..((((........))))..))....((((((((((...))))))))))... ( -7.20, z-score = -1.79, R) >droEre2.scaffold_4784 2130470 54 - 25762168 --GCUUCAUGCAUUGUUAAGUCUUGCGUUCGAUGUUAAUAACCUAUUAAUAUUUCC --.....(((((...........)))))..((((((((((...))))))))))... ( -6.70, z-score = -1.11, R) >consensus __GCUUCAUUCACAAUUAAGUGUUCCGUUCGAUAUUAAUAACCUAUUAAUAUUUCC ..............................((((((((((...))))))))))... ( -4.45 = -3.95 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:06 2011