| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,114,135 – 2,114,234 |
| Length | 99 |
| Max. P | 0.777547 |
| Location | 2,114,135 – 2,114,234 |
|---|---|
| Length | 99 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 83.11 |
| Shannon entropy | 0.32873 |
| G+C content | 0.56139 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -13.59 |
| Energy contribution | -12.47 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2114135 99 - 24543557 ------UUCUCCAGCCAGGAGUACUCGCACUCCAGCCAGGAGCAGCACCAGGAGCAAAGGAUUAGCCGCACCGAGCAGCACGUCCAGCGCAGCCAGGUCACCACC--- ------..((((.((..(((((......))))).))..))))..(.(((.((.((...((((..((.((.....)).))..)))).))....)).))))......--- ( -27.00, z-score = -0.66, R) >droSim1.chr3L 1672729 99 - 22553184 ------UUCUCCAGCCAGGAGUACUCGCACUCCAGCCAGGAGCAGCACCAGGAGCAAAGGAUUAGCCGCACCGAGCAGCACGUCCAGCGCAGCCAGGUCACCACC--- ------..((((.((..(((((......))))).))..))))..(.(((.((.((...((((..((.((.....)).))..)))).))....)).))))......--- ( -27.00, z-score = -0.66, R) >droSec1.super_2 2139720 99 - 7591821 ------UUCUCCAGCCAGGAGUACUCGCACUCCAGCCAGGAGCAGCACCAGGAGCAAAGGAUUAGCCGCACCGAGCAGCACGUCCAGCGCAGCCAGGUCACCACC--- ------..((((.((..(((((......))))).))..))))..(.(((.((.((...((((..((.((.....)).))..)))).))....)).))))......--- ( -27.00, z-score = -0.66, R) >droEre2.scaffold_4784 2108006 99 - 25762168 ------UACUCCACCCAGGAGUACUCGCACUCCAGCCAGGAGCAGCACCAGGAGCAAAGGAUUAGCCGCACCGAGCAGCAUGUCCAGCGCAGCCAAGUCACCACC--- ------((((((.....))))))...((.((((.....))))..))....((.((...((((..((.((.....)).))..)))).))....))...........--- ( -26.20, z-score = -1.31, R) >droAna3.scaffold_13337 22577578 93 + 23293914 ------UAUUCCUCUCAGGAAUACUCGCAUUCUAGCCAGGAGCAGCAC---CAGCAGAGGAUUAGCCGCACCG---AGCAUGUCCAGCACAGGCAUGUUACCACC--- ------((((((.....))))))...((......))..((.((.((..---..))...((.....)))).)).---((((((((.......))))))))......--- ( -21.50, z-score = -0.32, R) >dp4.chrXR_group6 12019024 108 - 13314419 CAGCAGUACUCCACUCAGGAGUACUCGCACUCCAGCCAGGAGCAGCAUCAGCAGCAAAGGAUUAGCCGCACCGAACAGCAUGUUCAGAGGAGUCAAAUCACCAGCACC ..((((((((((.....)))))))).))(((((.....((.((.((....))......((.....)))).))((((.....))))...)))))............... ( -33.70, z-score = -4.04, R) >droPer1.super_33 39920 108 - 967471 CAGCAGUACUCCACUCAGGAGUACUCGCACUCCAGCCAGGAGCAGCAUCAGCAGCAAAGGAUUAGCCGCACCGAACAGCAUGUUCAGAGGAGUCAAAUCACCAGCACC ..((((((((((.....)))))))).))(((((.....((.((.((....))......((.....)))).))((((.....))))...)))))............... ( -33.70, z-score = -4.04, R) >droWil1.scaffold_180916 1414816 105 + 2700594 CAGCAAUACUCAACUCAGGAGUAUUCGCACUCCAGCCAGGAGCAGCAUCAGCAGCAAAGGAUUAGCCGCACUGAACAACAUGUUCAGAGGAGUCAAAUCACCACU--- ..(((((((((.......))))))).))(((((.((.....((.((....)).))...((.....)))).((((((.....)))))).)))))............--- ( -30.00, z-score = -3.42, R) >droVir3.scaffold_13049 13232976 102 + 25233164 ---CAAUACUCCACCCAGGAGUAUUCGCACUCCAGCCAAGAGCAGCAUCAGCAGCAAAGGAUUAGCCGCACUGAACAACAUGUUCAGAGGAGUCAAAUCACCACU--- ---.((((((((.....)))))))).(.(((((.((.....((.((....)).))...((.....)))).((((((.....)))))).))))))...........--- ( -30.70, z-score = -4.65, R) >droMoj3.scaffold_6680 8820483 99 - 24764193 ---CAAUACUCCACCCAGGAGUACUCGCACUCCACUCAAGAGCAGCAC---CAGCAAAGGAUUAGCCGCACUGAACAACAUGUUCAGAGGAGUCAAAUCACCACU--- ---...((((((.....))))))...(.(((((........((.((..---..))...((.....)))).((((((.....)))))).))))))...........--- ( -27.70, z-score = -3.93, R) >droGri2.scaffold_15110 13125147 102 + 24565398 ---CAAUACUCCACUCAGGAGUAUUCGCACUCCAGUCAAGAGCAGCAUCAGCAGCAACGGAUAAGCCGCACUGAACAACAUGUUCAGAGGAGUCAAAUCACCACU--- ---.((((((((.....)))))))).(.(((((........((.((....)).))..(((.....)))..((((((.....)))))).))))))...........--- ( -29.90, z-score = -4.13, R) >consensus ___CA_UACUCCACCCAGGAGUACUCGCACUCCAGCCAGGAGCAGCACCAGCAGCAAAGGAUUAGCCGCACCGAACAGCAUGUUCAGAGGAGUCAAAUCACCACC___ .............(((.(((((......))))).....((.((.((.......))...((.....)))).))..............).)).................. (-13.59 = -12.47 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:57:05 2011