| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,036,631 – 2,036,692 |
| Length | 61 |
| Max. P | 0.993837 |
| Location | 2,036,631 – 2,036,692 |
|---|---|
| Length | 61 |
| Sequences | 7 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 64.25 |
| Shannon entropy | 0.66915 |
| G+C content | 0.48496 |
| Mean single sequence MFE | -19.05 |
| Consensus MFE | -9.07 |
| Energy contribution | -9.69 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.65 |
| SVM RNA-class probability | 0.993837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2036631 61 + 24543557 GAAAGGCGCUAGC-UUUC-GUAACCGGUUCCUUACUGUGCAGGAAGGUGCUGGUGAAUAAAAC------------ (((((.(....))-))))-...((((((.((((.((....)).)))).)))))).........------------ ( -18.00, z-score = -1.55, R) >droWil1.scaffold_180916 1333919 73 - 2700594 GAAAGAUUCUGCAAUAAG--CAGCCAGAAGCAUUGUGAACAGCAGGAGGCGGGCGACGAACGGAAAUCGUGGCCC ....(.((((((.....(--(........))..((....))))))))..)((((.((((.......)))).)))) ( -22.70, z-score = -1.99, R) >droSim1.chr3L 1606048 62 + 22553184 GAAAGGCGCUCGCCUUUC-CUAACCGGUUCCUUUCUGUGCAGGAAGGUGCUGGUGAGUAAAAC------------ (((((((....)))))))-((.((((((.(((((((....))))))).)))))).))......------------ ( -28.70, z-score = -4.60, R) >droSec1.super_2 2061114 62 + 7591821 GAAAGGAGCUCGUCUUCC-CGAACCGGUUCCUUUCUGUGCAGGAAGGUGCUGGUGAAUAAAAC------------ ....((((......))))-...((((((.(((((((....))))))).)))))).........------------ ( -19.80, z-score = -1.75, R) >droYak2.chr3L 1993240 61 + 24197627 GAAAGUCGCUCUU-UUCC-CCAACCGGUUCCUUUCUGUGCAGGAAGGUGCUGGUGAAUAAAAC------------ (((((.....)))-))..-...((((((.(((((((....))))))).)))))).........------------ ( -18.40, z-score = -2.10, R) >droEre2.scaffold_4784 2031443 63 + 25762168 CAAAGCCGCUCUUUUUUUACUAACCGGUUCCUUUCUGUGCAGGAAGGUGCUGGUGAAUAAAAC------------ ..............(((((...((((((.(((((((....))))))).))))))...))))).------------ ( -19.10, z-score = -2.43, R) >droAna3.scaffold_13337 22494872 54 - 23293914 GAAAG--GGUGAAAUUCU-GAAUCGAGCUAUUUCUUGUGCAUUAAG-UUCUUGUGCAU----------------- ((((.--(((........-.......))).))))..((((((....-.....))))))----------------- ( -6.66, z-score = 0.95, R) >consensus GAAAGGCGCUCGU_UUCC_CUAACCGGUUCCUUUCUGUGCAGGAAGGUGCUGGUGAAUAAAAC____________ ......................((((((.((((.((....)).)))).))))))..................... ( -9.07 = -9.69 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:59 2011