| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,032,571 – 2,032,683 |
| Length | 112 |
| Max. P | 0.689170 |
| Location | 2,032,571 – 2,032,683 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.38 |
| Shannon entropy | 0.44794 |
| G+C content | 0.49137 |
| Mean single sequence MFE | -27.77 |
| Consensus MFE | -12.25 |
| Energy contribution | -13.83 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2032571 112 - 24543557 CGCCUUUACGUUC-CCCAGUUAUUGUAAUUUACCAUUUCCUUGAAUU----GUGCCACAAUGCUCCCCUGGACCAGCAGCUCACCCUUCAUGAGCAU---GUGGCUACAGUUUGGAGCAC .........((((-(..((..(.((........)).)..)).(((((----((((((((.((((((...)))...)))(((((.......))))).)---))))).)))))))))))).. ( -30.10, z-score = -2.35, R) >droSim1.chr3L 1602080 112 - 22553184 CUCUUUUCCGUUC-CCCAGUUAUUGUAAUUUACCAUUUCCUUGAACU----GUGCCACACUGCUCCCCUGGACCAGCAGCUCACCCUUCAUGAGCAU---GUGGCUACAGUUUGGAGCAC .........((((-(..((..(.((........)).)..)).(((((----(((((((((((.(((...))).)))..(((((.......))))).)---))))).)))))))))))).. ( -33.70, z-score = -3.64, R) >droSec1.super_2 2057173 112 - 7591821 CUCUUUUCCGUUC-CCCAGUUAUCGUAAUUUACCAUUUCCUUGAACU----GUGCCACACUGCUCCCCUGGACCAGCAGCUCACCCUUCAUGAGCAU---GUGGCUACAGUUUGGAGCAC .........((((-(.........(((...))).........(((((----(((((((((((.(((...))).)))..(((((.......))))).)---))))).)))))))))))).. ( -33.80, z-score = -3.80, R) >droYak2.chr3L 1989037 96 - 24197627 -----------CC-UCCAGUUAUUGUAAUUUACCAAUUCUUUG---------UGCCACAUUGCUCCCCUGGACCAGCAGCUCACCCUUCAUGAGCGU---GUGGCUACAGUUUGGAGCAC -----------.(-(((((..((((((......(((....)))---------.(((((((((((((...)))...)))(((((.......)))))))---)))))))))))))))))... ( -29.60, z-score = -2.75, R) >droEre2.scaffold_4784 2027255 119 - 25762168 CGCUUUUACAUUC-UCCAGUUAUUGUAAUUUACCAUUACCCCACAGUUCAACUGCCACAUUGCUCCCCUGGACCAGCAGCUCACCCUUCAUGGGCGCACAGUGGCUACAGUUUGGGGCAC .....(((((...-.........)))))..........(((((......(((((((((..(((.(((.((((..............)))).))).)))..)))))...)))))))))... ( -28.14, z-score = -0.27, R) >droAna3.scaffold_13337 22490885 101 + 23293914 UCCUGUUACUUUCAAUUCGUUUUUGUAAUUUAAAAUUCCUUCAACC-----CAGGCCCAGUCCUCCCCACG-----------ACCCUUCAUGUGCAU---GUUGCUACAGUUUGGAACAC ...((((.............(((((.....)))))..........(-----(((((...(((........)-----------))......(((((..---...)).))))))))))))). ( -11.30, z-score = 0.80, R) >consensus CGCUUUUACGUUC_CCCAGUUAUUGUAAUUUACCAUUUCCUUGAACU____GUGCCACACUGCUCCCCUGGACCAGCAGCUCACCCUUCAUGAGCAU___GUGGCUACAGUUUGGAGCAC ............................................................((((((.(((..(((...(((((.......)))))......)))...)))...)))))). (-12.25 = -13.83 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:58 2011