| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,024,893 – 2,024,983 |
| Length | 90 |
| Max. P | 0.530308 |
| Location | 2,024,893 – 2,024,983 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.77 |
| Shannon entropy | 0.36276 |
| G+C content | 0.32016 |
| Mean single sequence MFE | -19.93 |
| Consensus MFE | -11.23 |
| Energy contribution | -11.02 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530308 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 2024893 90 + 24543557 --------------UUUUUUUGCCGAUUU--CGUUCAGCUAUAAAUUUUU-GCAUAUUUUCAUUAGUUGUCAGAAAUGCU---UUUGAUGAUUUAUGCAUGUUUUUG--ACG--- --------------.......((.((...--...)).))..((((..(.(-(((((...(((((((..(.((....))).---.)))))))..)))))).)..))))--...--- ( -18.70, z-score = -1.98, R) >droSim1.chr3L 1594471 90 + 22553184 --------------UUUUUUUGCCGAUUU--CGUUCAGCUAUAAAUUUUU-GCAUAUUUUCAUUAGUUGUCAGAAAUGCU---UUUGAUGAUUUAUGCAUGUUUUUG--ACG--- --------------.......((.((...--...)).))..((((..(.(-(((((...(((((((..(.((....))).---.)))))))..)))))).)..))))--...--- ( -18.70, z-score = -1.98, R) >droSec1.super_2 2049598 90 + 7591821 --------------UUUUUUUGCCGAUUU--CGUUCAGCUAUAAAUUUUU-GCAUAUUUUCAUUAGUUGUCAGAAAUGCU---UUUGAUGAUUUAUGCAUGUUUUUG--ACG--- --------------.......((.((...--...)).))..((((..(.(-(((((...(((((((..(.((....))).---.)))))))..)))))).)..))))--...--- ( -18.70, z-score = -1.98, R) >droYak2.chr3L 1980738 90 + 24197627 --------------UUUUUUUGUCGAUUU--CGUUCAGCUAUAAAUUUCU-GCAUAUUUUCAUUAGUUGUCAGAAAUGCU---UUUGAUGAUUUAUGCAUGUUUUUG--ACG--- --------------.......(((((...--...)).............(-(((((...(((((((..(.((....))).---.)))))))..)))))).......)--)).--- ( -19.00, z-score = -2.12, R) >droEre2.scaffold_4784 2019569 90 + 25762168 --------------UUUUUUUGUCGAUUU--CGUUCGGCUAUAAAUUUCU-GCAUAUUUUCAUUAGUUGUCAGAAAUGCU---UUUGAUGAUUUAUGCAUGUUUUUG--ACG--- --------------.......(((((...--...)))))..((((..(.(-(((((...(((((((..(.((....))).---.)))))))..)))))).)..))))--...--- ( -22.10, z-score = -3.40, R) >droAna3.scaffold_13337 22482967 90 - 23293914 --------------UUUUUCCGCCGAUUU--CGCCGAGCUAUAAAUUUUU-GCAUAUUUUCAUUAGUUGUCAGCGCUGCU---UUUGAUGAUUUAUGCAUGUUUUUG--AUG--- --------------.......((((....--...)).))..((((..(.(-(((((...(((((((..(.((....))).---.)))))))..)))))).)..))))--...--- ( -16.90, z-score = -0.70, R) >droPer1.super_20 1843290 115 + 1872136 UUUUUUUUUUUUGGAGCCCUCUACGAUUUAGCAGUGCGCCAUAAAUUUUUUGCAUAUUUUCAUUAGUUGUCAGCGCUGCUGCUUUUGAUGAUUUAUGCAUGUUUUUGAUGCGCUC ...........((((....)))).........((((((.((.((((....((((((...(((((((..(.((((...)))))..)))))))..)))))).)))).)).)))))). ( -29.00, z-score = -2.09, R) >droVir3.scaffold_13049 13124172 82 - 25233164 ---------------------GUCGAUUU--GG--CUGCUAUAAAUUUUU-GCAUGCUUUCAUUAGUUGUCAGCGUUGCU---UUUGAUGAUUUAUGCAUGUUUUUUAGAU---- ---------------------(((.....--((--((((.(((((((...-(((((((..((.....))..)))).))).---......)))))))))).))).....)))---- ( -16.30, z-score = -0.34, R) >droMoj3.scaffold_6680 8741387 93 + 24764193 ----------GCUUUCUUUUAGUCGAUUU--CGG-CUGCUAUAAAUUUGU-GCAUGUUUUCAUUAGUUGUCAGCGCUGCU---UUUGAUGAUUUAUGCAUGUUUUUGC-AU---- ----------((.......((((((....--)))-)))....(((..(((-(((((...(((((((..(.((....))).---.)))))))..))))))))..)))))-..---- ( -23.70, z-score = -1.89, R) >droGri2.scaffold_15110 13037273 85 - 24565398 ------------------UUUGCCGUUUU--CAG-CUGCCAUAAAUUUUU-GCAUGUUUUCAUUAGUUGUCAGCCUUGCU---UUUGAUGAUUUAUGCAUGUUUUUG--AUG--- ------------------...((.((...--..)-).))((.((((...(-(((((...(((((((..((.......)).---.)))))))..)))))).)))).))--...--- ( -16.20, z-score = -1.07, R) >consensus ______________UUUUUUUGCCGAUUU__CGUUCAGCUAUAAAUUUUU_GCAUAUUUUCAUUAGUUGUCAGAAAUGCU___UUUGAUGAUUUAUGCAUGUUUUUG__ACG___ ...................................................(((((...(((((((.....((.....))....)))))))..)))))................. (-11.23 = -11.02 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:56 2011