| Sequence ID | dm3.chr3L |
|---|---|
| Location | 2,001,217 – 2,001,278 |
| Length | 61 |
| Max. P | 0.746397 |
| Location | 2,001,217 – 2,001,278 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 83.90 |
| Shannon entropy | 0.27905 |
| G+C content | 0.49161 |
| Mean single sequence MFE | -22.05 |
| Consensus MFE | -12.85 |
| Energy contribution | -13.72 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 2001217 61 + 24543557 ---------GCUGGCUAUAAUCCAUUUUGUGU-GGGGCUUUGGC--AACUGCACUUUGAGUGGAGAGUACCGA ---------..(((.(((..(((((((.(((.-.(.((....))--..)..)))...)))))))..)))))). ( -20.40, z-score = -1.93, R) >droAna3.scaffold_13337 22459716 71 - 23293914 GCUAUCCAGACAGGACUUAAUCCAUUUUGUGUUGGGGCUUCGGCCAAACUGCAUCUUGAGUGG--GUCAGCAG ((((((((..(((((......(((........)))(((....)))........)))))..)))--)).))).. ( -24.40, z-score = -1.96, R) >droEre2.scaffold_4784 1996014 61 + 25762168 ---------GCUGGCUAUAAUCCAUUUUGUGU-GGGGCUUUGGC--CACUGCACUUUGAGUGGAGAUUACCGA ---------..(((.((...(((((((.(((.-.((((....))--).)..)))...)))))))...))))). ( -23.40, z-score = -3.21, R) >droYak2.chr3L 1956249 61 + 24197627 ---------GCUGGCUAUAAUCCAUUUUGUGU-GGGGCUUUGGC--AACUGCACUUUGAGUGGAGAUUACCCA ---------...((.((...(((((((.(((.-.(.((....))--..)..)))...)))))))...)).)). ( -19.30, z-score = -1.47, R) >droSec1.super_2 2026269 61 + 7591821 ---------GCUGGCUAUAAUCCAUUUUGUGU-GGGGCUUUGGC--AACUGCACUUUGAGUGGAGAUUGCCGA ---------..((((.....(((((((.(((.-.(.((....))--..)..)))...)))))))....)))). ( -22.40, z-score = -2.70, R) >droSim1.chr3L 1570585 61 + 22553184 ---------GCUGGCUAUAAUCCAUUUUGUGU-GGGGCUUUGGC--AACUGCACUUUGAGUGGAGAUUGCCGA ---------..((((.....(((((((.(((.-.(.((....))--..)..)))...)))))))....)))). ( -22.40, z-score = -2.70, R) >consensus _________GCUGGCUAUAAUCCAUUUUGUGU_GGGGCUUUGGC__AACUGCACUUUGAGUGGAGAUUACCGA ............((.((...(((((((.((((.(..((....))....).))))...)))))))...)))).. (-12.85 = -13.72 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:55 2011