| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,937,423 – 1,937,513 |
| Length | 90 |
| Max. P | 0.619472 |
| Location | 1,937,423 – 1,937,513 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 76.72 |
| Shannon entropy | 0.51892 |
| G+C content | 0.46914 |
| Mean single sequence MFE | -28.08 |
| Consensus MFE | -10.15 |
| Energy contribution | -9.97 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.619472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1937423 90 + 24543557 AUCGAGAUUUAAGCGAAUUCAACUGGUUUAGAUCGGUGGCCAUUGGACUGAGCCGGAUUGCGCCGGUUUGGGCCAGAAAUUCGCCAUCGC- .....(((((((((.(.......).)))))))))((((((..((((.(..((((((......))))))..).))))......))))))..- ( -34.00, z-score = -2.28, R) >droSim1.chr3L 1492556 90 + 22553184 AUCGAGAUUUAAGCGAAUUCAACUGGUUUAGAUCGGUGGCCAUUGGACUGAGCCGGAUUGCGCCGGUUUGGGCCAGAAAUUCGCCAUCGC- .....(((((((((.(.......).)))))))))((((((..((((.(..((((((......))))))..).))))......))))))..- ( -34.00, z-score = -2.28, R) >droSec1.super_2 1962848 90 + 7591821 AUCGAGAUUUAAGCGAAUUCAACUGGUUUAGAUCGGUGGCCAUUGGACUGAGCCGGAUUGCGCCGGUUUGGGCCAGAAAUUCGCCAUCGC- .....(((((((((.(.......).)))))))))((((((..((((.(..((((((......))))))..).))))......))))))..- ( -34.00, z-score = -2.28, R) >droYak2.chr3L 1891705 90 + 24197627 AUCGAGAUUUAAGCGAAUUUAACUGGUUUAGAUCGGUGGCCAUUGGACUGAGCCGGAUUGCGCCGGUUUUGGCCAGAAAUUCGCCAUCGC- .....(((....((((((((..(((((..(((((((((....((((......))))....)))))))))..))))))))))))).)))..- ( -31.70, z-score = -2.09, R) >droEre2.scaffold_4784 1926386 90 + 25762168 AUCGAGAUUUAAGCGAAUUCAACUGGUUUAGAUCGGUGGCCAUUGGACUGAGCCGGAUUGCGCCGGUUUUGGCCAGAAAUUCGCCAUCGC- .....(((((((((.(.......).)))))))))((((((..((((...(((((((......)))))))...))))......))))))..- ( -31.30, z-score = -1.69, R) >droAna3.scaffold_13337 22398862 90 - 23293914 AUCGAGAUUUAAGCGAAUUCAACUGGUUUAGAUCGGUGACCAGUGAACUGAGCUGGAUUGCGCCGGUUUUGGCCAGAAAUUCGCCAUUGC- ............(((((((...(((((..(((((((((.(((((.......)))))....)))))))))..))))).)))))))......- ( -34.90, z-score = -3.94, R) >dp4.chrXR_group6 5124338 88 + 13314419 AUUCAGAUUUAAGCGAAUUCAACUGGUUUAUAUCAGUGGCUUGUGGCUUGAGCCGGAUUGCGCCGGUUUUGGCCAGAAAUUUGCCAUC--- .....(((.(((((.(.......).))))).))).(((((((.(((((.(((((((......))))))).))))).))....))))).--- ( -30.60, z-score = -2.66, R) >droPer1.super_9 3433570 88 + 3637205 AUUCAGAUUUAAGCGAAUUCAACUGGUUUAUAUCAGUGGCUUGUGGCUUGAGCCGGAUUGCGCCGGUUUUGGCCAGAAAUUUGCCAUC--- .....(((.(((((.(.......).))))).))).(((((((.(((((.(((((((......))))))).))))).))....))))).--- ( -30.60, z-score = -2.66, R) >droWil1.scaffold_180916 1192254 90 - 2700594 AUUGAGAUUUAAGCGAAUUUAACUGGUUUAUAUCGGAGCCCAGUGGCUUUUACCAGAUUGUGCCAGUUUGGGCCAGAAAUUGAUCAGAGC- ....((((((....))))))..((((((.((.((.(.((((((((((..............))))..))))))).)).)).))))))...- ( -22.54, z-score = -1.17, R) >droVir3.scaffold_13049 15866017 70 - 25233164 -AUGAGAUUUAACUGAAUUUAACUGGUUAUUAUUGGAUAC-----------GCCGGUUUUCGCCAGUUUUGGCUAGAAAUAC--------- -...........(((..(..(((((((.(..(((((....-----------.)))))..).)))))))..)..)))......--------- ( -15.10, z-score = -1.78, R) >droMoj3.scaffold_6680 11389502 69 + 24764193 -AUGAGCUUUAAGCAAACUUAACUGGUUUAUAUCGGAAA-----------UAUCGGCUCGUGCCAGUUUUGGCUAGAAACU---------- -((((((((((((....)))))(((((....)))))...-----------....)))))))(((......)))........---------- ( -16.70, z-score = -1.47, R) >droGri2.scaffold_15110 6794316 89 + 24565398 -AUGAGAUUUAAGCGAAUUUAACUGGUUUCCGUUGGAAAU-GCUGAACUGCGCCGGCUUGCGCCAGUUUUAGCCAGAAAUCGGCCCUGGAC -....(((((..((......(((((((....(((((....-((......)).)))))....)))))))...))...))))).......... ( -21.50, z-score = 0.48, R) >consensus AUCGAGAUUUAAGCGAAUUCAACUGGUUUAGAUCGGUGGCCAUUGGACUGAGCCGGAUUGCGCCGGUUUUGGCCAGAAAUUCGCCAUCGC_ ......................((((((...(((((..........................)))))...))))))............... (-10.15 = -9.97 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:50 2011