| Sequence ID | dm3.chr3L |
|---|---|
| Location | 1,927,953 – 1,928,045 |
| Length | 92 |
| Max. P | 0.972887 |
| Location | 1,927,953 – 1,928,045 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 67.27 |
| Shannon entropy | 0.61729 |
| G+C content | 0.53644 |
| Mean single sequence MFE | -17.86 |
| Consensus MFE | -11.72 |
| Energy contribution | -11.60 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.972887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 1927953 92 - 24543557 GCAGCCGGCCACAAGGACUCACCCACACAUCCACACACCCACCCACACGCU------------CUCAACCUGUGUCACUCGAGUGUGAAUAUCCGCACUCGUUC ......((......((......))......))..............((((.------------........))))....((((((((......))))))))... ( -15.50, z-score = 0.08, R) >droAna3.scaffold_13337 22389670 72 + 23293914 --------------------ACACCCUCAAUCGAGCUCCCAGUCACACACA------------CUCAACCUGUGUCACUCGAGUGUGAAUAACCGCACUUGUUC --------------------.....(((....))).....(((.(((((..------------.......))))).)))((((((((......))))))))... ( -15.80, z-score = -1.75, R) >droEre2.scaffold_4784 1916950 88 - 25762168 ----GCAACCUUGUGGCUACAAGGACUCACUCACACACAAACACACUCACG------------CUCAACCUGUGUCACUCGAGUGUGAAUAUCCGCACUCGUUC ----((..((((((....)))))).................((((((((((------------(.......)))).....))))))).......))........ ( -21.70, z-score = -1.94, R) >droYak2.chr3L 1882141 96 - 24197627 --------GUAACCAGCCACAAGGACUCACUCACACCCACACACUGGCUCACACACACACACGCUCAACCUGUGUCACUCGAGUGUGAAUAUCCGCACUCGUUC --------......(((((...((............))......))))).......(((((.(.....).)))))....((((((((......))))))))... ( -19.10, z-score = -0.65, R) >droSec1.super_2 1953377 96 - 7591821 --------GCAGCCGGCCACAAGGACUCACUCACACACCCACAUAUCCACACACCCACACACUCUCAACCUGUGUCACUCGAGUGUGAAUAUCCGCACUCGUCC --------..............((((..............................(((((.........))))).....(((((((......))))))))))) ( -18.10, z-score = -1.23, R) >droSim1.chr3L 1483085 80 - 22553184 --------GCAGGCGGCCACAAGGACUCACUCACACACCCACACACUC----------------UCAACCUGUGUCACUCGAGUGUGAAUAUCCGCACUCGUUC --------(((((.(....)..((..............))........----------------....)))))......((((((((......))))))))... ( -17.04, z-score = -0.24, R) >droWil1.scaffold_180916 1176904 84 + 2700594 --------------ACAUACAAAGUCUCGCACACACAGACACA-UAGC-----CAUACACACACUCAACCUGUGUCACUCGAGUGUGAAUAUCCGCACUCGUUC --------------.......................((((((-....-----.................))))))...((((((((......))))))))... ( -17.80, z-score = -1.92, R) >consensus ________GCA__CGGCCACAAGGACUCACUCACACACCCACACACACACA____________CUCAACCUGUGUCACUCGAGUGUGAAUAUCCGCACUCGUUC ...............................................................................((((((((......))))))))... (-11.72 = -11.60 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:56:48 2011